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Series GSE133035 Query DataSets for GSE133035
Status Public on Jun 19, 2020
Title Foxo4 transcriptional factor represses TH1 cell differentiation and effector function by regulating Dickkopf-3 production
Organism Mus musculus
Experiment type Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary Forkhead box O transcriptional factors, especially FoxO1 and FoxO3a, play critical roles in physiologic and pathologic immune responses. Here, in studies to explore the function of FoxO4 in lymphocyte biology, we showed that loss of FoxO4 in T cells promotes TH1 cell differentiation and augments the production of interferon-γ (IFN-γ) in vitro. Correspondingly, conditional deletion of FoxO4 in CD4+ T cells enhances T cell-specific responses to Listeria monocytogenes infection in vivo. Genome-wide occupancy and transcriptomic analyses identified DKK3 (encoding Dickkopf-3 protein) as a direct transcriptional target gene of FoxO4. Consistent with the FoxO-DKK3 relationship, recombinant DKK3 protein restored normal levels of IFN-γ production in FoxO4-deficient TH1 cells, through downregulation of Lef1 expression. Together, our data identify and validate a novel FoxO4-DKK3-LEF-1 axis in TH1 cell differentiation, providing an important insight and supplement for FoxO family proteins in T lymphocyte biology, and revealing a promising target for treatment of immune-related diseases.
 
Overall design ChIP-Seq (input and FoxO4-specific ChIP) and Microarray (RV vs RV-FoxO4 infected TH1 cells)。
 
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Submission date Jun 19, 2019
Last update date Jun 21, 2020
Contact name Chen Dong
E-mail(s) chendong@tsinghua.edu.cn
Phone 4692684025
Organization name Tsinghua University
Street address 30 Shuangqing Rd
City Beijing
State/province Beijing
ZIP/Postal code 100091
Country China
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL13912 Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Feature Number version)
Samples (4)
GSM3898660 RV
GSM3898661 RV-FoxO4
GSM3898662 WT TH1_Input
This SuperSeries is composed of the following SubSeries:
GSE133033 Gene expression profiles of FoxO4 overexpressing TH1 cells.
GSE133034 FoxO4 ChIP-Seq profiles of WT differentiated TH1 cells
Relations
BioProject PRJNA549719

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Supplementary file Size Download File type/resource
GSE133035_RAW.tar 14.2 Mb (http)(custom) TAR (of BED, TXT)
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