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| Status |
Public on Aug 09, 2019 |
| Title |
Next Generation Sequencing Facilitates Quantitative Analysis of HePG2i cell line with and without DOX induced GATA4 expression Transcriptomes |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
HePG2i cell line mRNA profiles of DOX induced GATA4 expression and non-DOX induced were generated by deep sequencing, in triplicate, using Illumina HiSeq 10000. The sequence reads that passed quality filters were analyzed at the transcript isoform level with two methods: Burrows–Wheeler Aligner (BWA) followed by ANOVA (ANOVA) and TopHat followed by Cufflinks.
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| Overall design |
HePG2i cell line mRNA profiles of DOX induced GATA4 expression and non-DOX induced were generated by deep sequencing, in triplicate, using Illumina HiSeq 1000.
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| Contributor(s) |
Lu F, Cheng L |
| Citation(s) |
31903133 |
| Submission date |
Aug 08, 2019 |
| Last update date |
Jan 14, 2020 |
| Contact name |
Feng Lu |
| E-mail(s) |
lu13016045214@sina.com
|
| Organization name |
Jinan university
|
| Street address |
601 huangpu avenue west
|
| City |
guangzhou |
| ZIP/Postal code |
510632 |
| Country |
China |
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| Platforms (1) |
| GPL15433 |
Illumina HiSeq 1000 (Homo sapiens) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA559361 |
| SRA |
SRP217840 |
