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GEO accession:
Series GSE136703
Query DataSets for GSE136703
Status
Public on Feb 11, 2020
Title
Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits
Organisms
Homo sapiens
;
unidentified plasmid
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32144282
Submission date
Aug 30, 2019
Last update date
Apr 01, 2020
Contact name
Carl G de Boer
Organization name
The Broad Institute
Lab
Aviv Regev
Street address
415 Main St
City
Cambridge
State/province
MA
ZIP/Postal code
02139
Country
USA
Platforms (5)
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GPL15520
Illumina MiSeq (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL25362
Illumina HiSeq 2500 (unidentified plasmid)
Samples (210)
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More...
GSM4055235
BJAB_0
GSM4055236
BJAB_1
GSM4055237
BJAB_4
GSM4055238
Jurkat_0
GSM4055239
Jurkat_1
GSM4055240
Jurkat_4
GSM4055241
U937_0
GSM4055242
U937_1
GSM4055243
U937_4
GSM4055400
CRISPRa_BJAB_CRISPRa1_A
GSM4055401
CRISPRa_BJAB_CRISPRa1_B
GSM4055402
CRISPRa_BJAB_CRISPRa1_C
GSM4055403
CRISPRa_BJAB_CRISPRa1_D
GSM4055404
CRISPRa_BJAB_CRISPRa1_E
GSM4055405
CRISPRa_BJAB_CRISPRa1_F
GSM4055406
CRISPRa_BJAB_CRISPRa1_NS
GSM4055407
CRISPRa_BJAB_CRISPRa2_A
GSM4055408
CRISPRa_BJAB_CRISPRa2_B
GSM4055409
CRISPRa_BJAB_CRISPRa2_C
GSM4055410
CRISPRa_BJAB_CRISPRa2_D
GSM4055411
CRISPRa_BJAB_CRISPRa2_E
GSM4055412
CRISPRa_BJAB_CRISPRa2_F
GSM4055413
CRISPRa_BJAB_CRISPRa2_NS
GSM4055414
CRISPRi_BJAB_FF_A
GSM4055415
CRISPRi_BJAB_FF_B
GSM4055416
CRISPRi_BJAB_FF_C
GSM4055417
CRISPRi_BJAB_FF_D
GSM4055418
CRISPRi_BJAB_FF_E
GSM4055419
CRISPRi_BJAB_FF_F
GSM4055420
CRISPRi_BJAB_FF_NS
GSM4055421
CRISPRi_BJAB_FF2_A
GSM4055422
CRISPRi_BJAB_FF2_B
GSM4055423
CRISPRi_BJAB_FF2_C
GSM4055424
CRISPRi_BJAB_FF2_D
GSM4055425
CRISPRi_BJAB_FF2_E
GSM4055426
CRISPRi_BJAB_FF2_F
GSM4055427
CRISPRi_BJAB_FF2_NS
GSM4055428
CRISPRa_BJAB_1_A
GSM4055429
CRISPRa_BJAB_1_B
GSM4055430
CRISPRa_BJAB_1_C
GSM4055431
CRISPRa_BJAB_1_D
GSM4055432
CRISPRa_BJAB_1_E
GSM4055433
CRISPRa_BJAB_1_F
GSM4055434
CRISPRa_BJAB_1_NS
GSM4055435
CRISPRa_BJAB_2_A
GSM4055436
CRISPRa_BJAB_2_B
GSM4055437
CRISPRa_BJAB_2_C
GSM4055438
CRISPRa_BJAB_2_D
GSM4055439
CRISPRa_BJAB_2_E
GSM4055440
CRISPRa_BJAB_2_F
GSM4055441
CRISPRa_BJAB_2_NS
GSM4055442
CRISPRi_GM_CRISPRi1_A
GSM4055443
CRISPRi_GM_CRISPRi1_B
GSM4055444
CRISPRi_GM_CRISPRi1_C
GSM4055445
CRISPRi_GM_CRISPRi1_D
GSM4055446
CRISPRi_GM_CRISPRi1_E
GSM4055447
CRISPRi_GM_CRISPRi1_F
GSM4055448
CRISPRi_GM_CRISPRi1_NS
GSM4055449
CRISPRi_GM_CRISPRi2_A
GSM4055450
CRISPRi_GM_CRISPRi2_B
GSM4055451
CRISPRi_GM_CRISPRi2_C
GSM4055452
CRISPRi_GM_CRISPRi2_D
GSM4055453
CRISPRi_GM_CRISPRi2_E
GSM4055454
CRISPRi_GM_CRISPRi2_F
GSM4055455
CRISPRi_GM_CRISPRi2_NS
GSM4055456
CRISPRa_Jurkat_CRISPRa1_A
GSM4055457
CRISPRa_Jurkat_CRISPRa1_B
GSM4055458
CRISPRa_Jurkat_CRISPRa1_C
GSM4055459
CRISPRa_Jurkat_CRISPRa1_D
GSM4055460
CRISPRa_Jurkat_CRISPRa1_E
GSM4055461
CRISPRa_Jurkat_CRISPRa1_F
GSM4055462
CRISPRa_Jurkat_CRISPRa1_NS
GSM4055463
CRISPRa_Jurkat_CRISPRa2_A
GSM4055464
CRISPRa_Jurkat_CRISPRa2_B
GSM4055465
CRISPRa_Jurkat_CRISPRa2_C
GSM4055466
CRISPRa_Jurkat_CRISPRa2_D
GSM4055467
CRISPRa_Jurkat_CRISPRa2_E
GSM4055468
CRISPRa_Jurkat_CRISPRa2_F
GSM4055469
CRISPRa_Jurkat_CRISPRa2_NS
GSM4055470
CRISPRi_Jurkat_FF_A
GSM4055471
CRISPRi_Jurkat_FF_B
GSM4055472
CRISPRi_Jurkat_FF_C
GSM4055473
CRISPRi_Jurkat_FF_D
GSM4055474
CRISPRi_Jurkat_FF_E
GSM4055475
CRISPRi_Jurkat_FF_F
GSM4055476
CRISPRi_Jurkat_FF_NS
GSM4055477
CRISPRi_Jurkat_FF2_A
GSM4055478
CRISPRi_Jurkat_FF2_B
GSM4055479
CRISPRi_Jurkat_FF2_C
GSM4055480
CRISPRi_Jurkat_FF2_D
GSM4055481
CRISPRi_Jurkat_FF2_E
GSM4055482
CRISPRi_Jurkat_FF2_F
GSM4055483
CRISPRi_Jurkat_FF2_NS
GSM4055484
CRISPRa_Jurkat_1_A
GSM4055485
CRISPRa_Jurkat_1_B
GSM4055486
CRISPRa_Jurkat_1_C
GSM4055487
CRISPRa_Jurkat_1_D
GSM4055488
CRISPRa_Jurkat_1_E
GSM4055489
CRISPRa_Jurkat_1_F
GSM4055490
CRISPRa_Jurkat_1_NS
GSM4055491
CRISPRa_Jurkat_2_A
GSM4055492
CRISPRa_Jurkat_2_B
GSM4055493
CRISPRa_Jurkat_2_C
GSM4055494
CRISPRa_Jurkat_2_D
GSM4055495
CRISPRa_Jurkat_2_E
GSM4055496
CRISPRa_Jurkat_2_F
GSM4055497
CRISPRa_Jurkat_2_NS
GSM4055498
CRISPRi_THP1_FF_A
GSM4055499
CRISPRi_THP1_FF_B
GSM4055500
CRISPRi_THP1_FF_C
GSM4055501
CRISPRi_THP1_FF_D
GSM4055502
CRISPRi_THP1_FF_E
GSM4055503
CRISPRi_THP1_FF_F
GSM4055504
CRISPRi_THP1_FF_NS
GSM4055505
CRISPRi_THP1_FF2_A
GSM4055506
CRISPRi_THP1_FF2_B
GSM4055507
CRISPRi_THP1_FF2_C
GSM4055508
CRISPRi_THP1_FF2_D
GSM4055509
CRISPRi_THP1_FF2_E
GSM4055510
CRISPRi_THP1_FF2_F
GSM4055511
CRISPRi_THP1_FF2_NS
GSM4055512
CRISPRa_THP1_1_A
GSM4055513
CRISPRa_THP1_1_B
GSM4055514
CRISPRa_THP1_1_C
GSM4055515
CRISPRa_THP1_1_D
GSM4055516
CRISPRa_THP1_1_E
GSM4055517
CRISPRa_THP1_1_F
GSM4055518
CRISPRa_THP1_1_NS
GSM4055519
CRISPRa_THP1_2_A
GSM4055520
CRISPRa_THP1_2_B
GSM4055521
CRISPRa_THP1_2_C
GSM4055522
CRISPRa_THP1_2_D
GSM4055523
CRISPRa_THP1_2_E
GSM4055524
CRISPRa_THP1_2_F
GSM4055525
CRISPRa_THP1_2_NS
GSM4055526
CRISPRa_U937_CRISPRa1_A
GSM4055527
CRISPRa_U937_CRISPRa1_B
GSM4055528
CRISPRa_U937_CRISPRa1_C
GSM4055529
CRISPRa_U937_CRISPRa1_D
GSM4055530
CRISPRa_U937_CRISPRa1_E
GSM4055531
CRISPRa_U937_CRISPRa1_F
GSM4055532
CRISPRa_U937_CRISPRa1_NS
GSM4055533
CRISPRa_U937_CRISPRa2_A
GSM4055534
CRISPRa_U937_CRISPRa2_B
GSM4055535
CRISPRa_U937_CRISPRa2_C
GSM4055536
CRISPRa_U937_CRISPRa2_D
GSM4055537
CRISPRa_U937_CRISPRa2_E
GSM4055538
CRISPRa_U937_CRISPRa2_F
GSM4055539
CRISPRa_U937_CRISPRa2_NS
GSM4055540
CRISPRi_U937_FF_A
GSM4055541
CRISPRi_U937_FF_B
GSM4055542
CRISPRi_U937_FF_C
GSM4055543
CRISPRi_U937_FF_D
GSM4055544
CRISPRi_U937_FF_E
GSM4055545
CRISPRi_U937_FF_F
GSM4055546
CRISPRi_U937_FF_NS
GSM4055547
CRISPRi_U937_FF2_A
GSM4055548
CRISPRi_U937_FF2_B
GSM4055549
CRISPRi_U937_FF2_C
GSM4055550
CRISPRi_U937_FF2_D
GSM4055551
CRISPRi_U937_FF2_E
GSM4055552
CRISPRi_U937_FF2_F
GSM4055553
CRISPRi_U937_FF2_NS
GSM4055554
CRISPRa_U937_1_A
GSM4055555
CRISPRa_U937_1_B
GSM4055556
CRISPRa_U937_1_C
GSM4055557
CRISPRa_U937_1_D
GSM4055558
CRISPRa_U937_1_E
GSM4055559
CRISPRa_U937_1_F
GSM4055560
CRISPRa_U937_1_NS
GSM4055561
CRISPRa_U937_2_A
GSM4055562
CRISPRa_U937_2_B
GSM4055563
CRISPRa_U937_2_C
GSM4055564
CRISPRa_U937_2_D
GSM4055565
CRISPRa_U937_2_E
GSM4055566
CRISPRa_U937_2_F
GSM4055567
CRISPRa_U937_2_NS
GSM4055618
MPRAv2_BJAB_stim_rep1
GSM4055619
MPRAv2_BJAB_stim_rep2
GSM4055620
MPRAv2_BJAB_unstim_rep1
GSM4055621
MPRAv2_BJAB_unstim_rep2
GSM4055622
MPRAv2_Jurkat_stim_rep1
GSM4055623
MPRAv2_Jurkat_stim_rep2
GSM4055624
MPRAv2_Jurkat_unstim_rep1
GSM4055625
MPRAv2_Jurkat_unstim_rep2
GSM4055626
MPRAv2_U937_stim_rep1
GSM4055627
MPRAv2_U937_stim_rep2
GSM4055628
MPRAv2_U937_unstim_rep1
GSM4055629
MPRAv2_U937_unstim_rep2
GSM4055630
transfection_BJAB_1_stim
GSM4055631
transfection_BJAB_1_unstim
GSM4055632
transfection_BJAB_2_stim
GSM4055633
transfection_BJAB_2_unstim
GSM4055634
transfection_BJAB_3_stim
GSM4055635
transfection_BJAB_3_unstim
GSM4055636
transfection_GM12878_1_stim
GSM4055637
transfection_GM12878_1_unstim
GSM4055638
transfection_GM12878_2_stim
GSM4055639
transfection_GM12878_2_unstim
GSM4055640
transfection_GM12878_3_stim
GSM4055641
transfection_GM12878_3_unstim
GSM4055642
transfection_Jurkat_1_stim
GSM4055643
transfection_Jurkat_1_unstim
GSM4055644
transfection_Jurkat_2_stim
GSM4055645
transfection_Jurkat_2_unstim
GSM4055646
transfection_Jurkat_3_stim
GSM4055647
transfection_Jurkat_3_unstim
GSM4055648
all_Jurkat_rep1_nostim_gDNA
GSM4055649
input_barcode_abundance_sequencing
GSM4055650
input_library_3.4E6_barcode_allele_matching
This SuperSeries is composed of the following SubSeries:
GSE136686
Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits [ATAC-seq]
GSE136693
Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits [CRISPR guide-seq]
GSE136702
Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits [MPRA]
Relations
BioProject
PRJNA563093
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE136703_RAW.tar
1.0 Gb
(http)
(custom)
TAR (of BED, BW)
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