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Series GSE138269 Query DataSets for GSE138269
Status Public on Oct 02, 2019
Title Sequencing of patient tumor samples and cancer cell lines for endotype identification in multiple cancer types
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary DNA and RNA were isolated from snap frozen or FFPE primary tumor tissue, or from cultured and preserved cell cultures. All sequencing was performed at the Beijing Genomics Institute.
 
Overall design Tumor tissues were unperturbed from procurement to preservation, so there are no experimental conditions for any of the samples submitted. All culture conditions were based on established culture protocols for each cell line.
 
Contributor(s) Berlow NE, Ricker C, Keller C
Citation(s) 32014859, 32238403, 33708626
Submission date Oct 01, 2019
Last update date Mar 16, 2021
Contact name Noah Berlow
E-mail(s) noah@cc-tdi.org
Organization name CC-TDI
Street address 12655 SW Beaverdam Rd
City Beaverton
ZIP/Postal code 97005
Country USA
 
Platforms (2)
GPL15433 Illumina HiSeq 1000 (Homo sapiens)
GPL23227 BGISEQ-500 (Homo sapiens)
Samples (15)
GSM4104179 CF130_RNA
GSM4104180 PCB-00082_RNA
GSM4104181 Rh5_RNA
Relations
BioProject PRJNA575249
SRA SRP223891

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138269_RAW.tar 34.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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