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| Status |
Public on Jan 11, 2021 |
| Title |
Peptidylarginine deiminase IV (PADI4) has a novel tumor cell-autonomous suppressor role in regulating breast cancer stem cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
32265227 |
| Submission date |
Oct 07, 2019 |
| Last update date |
Apr 12, 2021 |
| Contact name |
Maxwell Lee |
| E-mail(s) |
leemax@mail.nih.gov
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| Phone |
240-276-5239
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| Organization name |
National Cancer Institute, NIH
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| Department |
CCR
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| Lab |
Laboratory of Human Carcinogenesis
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| Street address |
Building 37, Room 5120
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (4)
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| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
| GPL23159 |
[Clariom_S_Human] Affymetrix Clariom S Assay, Human (Includes Pico Assay) |
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| Samples (28)
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| GSM4106825 |
MCF10Ca1h cells, sh80-1 |
| GSM4106826 |
MCF10Ca1h cells, sh80-2 |
| GSM4106827 |
MCF10Ca1h cells, sh80-3 |
| GSM4107706 |
MCF10Ca1h cells, RNA.NT |
| GSM4107707 |
MCF10Ca1h cells, RNA.GSK484 |
| GSM4107708 |
MCF10Ca1h cells, RNA.CON |
| GSM4110030 |
MCF10Ca1h cells, H3.CON (S2) |
| GSM4110031 |
MCF10Ca1h cells, H3R2/8/17citr.CON (S5) |
| GSM4110032 |
MCF10Ca1h cells, H3K27me3.CON (S4) |
| GSM4110033 |
MCF10Ca1h cells, H3K4me3.GSK484 (S3) |
| GSM4110034 |
MCF10Ca1h cells, IgG.GSK484 (IgG) |
| GSM4110035 |
MCF10Ca1h cells, H3.GSK484 (S7) |
| GSM4110036 |
MCF10Ca1h cells, H3R2/8/17citr.GSK484 (S10) |
| GSM4110037 |
MCF10Ca1h cells, H3K27me3.GSK484 (S9) |
| GSM4110038 |
MCF10Ca1h cells, H3K4me3.GSK484 (S8) |
| GSM4110039 |
MCF10Ca1h cells, IgG.GSK484 (S6) |
| GSM4259534 |
MCF10Ca1h (M3) cells, RNA.CON |
| GSM4259535 |
MCF10Ca1h (M3) cells, RNA.CON.sorted.SORE6- |
| GSM4259536 |
MCF10Ca1h (M3) cells, RNA.CON.sorted.SORE6+ |
| GSM4259537 |
MCF10Ca1h (M3) cells, RNA.GSK484 |
| GSM4259538 |
MCF10Ca1h (M3) cells, RNA.GSK484.sorted.SORE6- |
| GSM4259539 |
MCF10Ca1h (M3) cells, RNA.GSK484.sorted.SORE6+ |
| GSM4259540 |
MCF10Ca1h (M3) cells, RNA.NT |
| GSM4259541 |
MCF10Ca1h (M3) cells, RNA.NT.sorted.SORE6- |
| GSM4259542 |
MCF10Ca1h (M3) cells, RNA.NT.sorted.SORE6+ |
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| This SuperSeries is composed of the following SubSeries:
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| GSE138407 |
Peptidylarginine deiminase IV (PADI4) has a novel tumor cell-autonomous suppressor role in regulating breast cancer stem cells [Array] |
| GSE138415 |
Peptidylarginine deiminase IV (PADI4) has a novel tumor cell-autonomous suppressor role in regulating breast cancer stem cells [RNA-Seq_1] |
| GSE138505 |
Peptidylarginine deiminase IV (PADI4) has a novel tumor cell-autonomous suppressor role in regulating breast cancer stem cells [ChIP-Seq] |
| GSE143442 |
Peptidylarginine deiminase IV (PADI4) has a novel tumor cell-autonomous suppressor role in regulating breast cancer stem cells [RNA-Seq_2] |
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| Relations |
| BioProject |
PRJNA576212 |
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