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Series GSE142290 Query DataSets for GSE142290
Status Public on Oct 12, 2021
Title ENTPD3 Marks Mature Stem Cell Derived Beta Cells Formed by Self-Aggregation in Vitro
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Stem cell derived beta-like cells (sBC) carry the promise of providing an abundant source of insulin-producing cells for use in cell replacement therapy for patients with diabetes, potentially allowing widespread implementation of a practical cure. To achieve their clinical promise, sBC need to function comparably to mature adult beta cells, but as yet they display varying degrees of maturity. Indeed, detailed knowledge of the events resulting in human beta cell maturation remains obscure. Here we show that sBC spontaneously self-enrich into discreet islet-like cap structures within in vitro cultures, independent of exogenous maturation conditions. Multiple complementary assays demonstrate that this process is accompanied by functional maturation of the selfenriched sBC (seBC); however, the seBC still contain distinct subpopulations displaying different maturation levels. Interestingly, the surface protein ENTPD3 (also known as nucleoside triphosphate diphosphohydrolase-3 (NDPTase3)) is a specific marker of the most mature seBC population and can be used for mature seBC identification and sorting. Our results illuminate critical aspects of in vitro sBC maturation and provide important insights towards developing functionally mature sBC for diabetes cell replacement therapy.
 
Overall design Single cell RNA-Seq and bulk RNA-seq of human iPSC induced beta cells
 
Contributor(s) Docherty FM, Riemondy KA, Hesselberth JR, Russ H
Citation(s) 34380694
Submission date Dec 18, 2019
Last update date Oct 14, 2021
Contact name Kent Augustus Riemondy
E-mail(s) kent.riemondy@cuanschutz.edu
Organization name University of Colorado School of Medicine
Department Biochemistry and Molecular Genetics
Street address 12801 E 17th Ave
City Aurora
State/province Colorado
ZIP/Postal code 80045
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (16)
GSM4224600 seBCs
GSM4224601 eBCs
GSM4224602 entpd3_neg_rep1
Relations
BioProject PRJNA596473
SRA SRP238097

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE142290_RAW.tar 26.2 Mb (http)(custom) TAR (of TSV)
GSE142290_count_matrix_d23_d30.tsv.gz 552.6 Kb (ftp)(http) TSV
GSE142290_count_matrix_entpd3.tsv.gz 644.4 Kb (ftp)(http) TSV
GSE142290_deseq2_gene_level_d23_d30.tsv.gz 2.3 Mb (ftp)(http) TSV
GSE142290_deseq2_gene_level_entpd3.tsv.gz 2.8 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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