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| Status |
Public on May 11, 2024 |
| Title |
Nucleobase adducts bind MR1 and stimulate MR1-restricted T cells |
| Organism |
Homo sapiens |
| Experiment type |
Other
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| Summary |
MR1T cells are a recently discovered class of T cells that recognize antigens presented by the MHC-I–related molecule MR1 in the absence of microbial infection. The nature of the self-antigens that stimulate MR1T cells remains unclear, hampering our understanding of their physiological role and therapeutic potential. By combining genetic, pharmacological, and biochemical approaches, we found that carbonyl stress and changes in nucleobase metabolism in target cells promote MR1T cell activation. Stimulatory compounds formed by carbonyl adducts of nucleobases were detected within MR1 molecules produced by tumor cells and their abundance and antigenicity were enhanced by drugs that induce carbonyl accumulation. Our data reveal carbonyl nucleobase adducts as MR1T cell antigens. Recognizing cells under carbonyl stress allows MR1T cells to monitor cellular metabolic changes with physiological and therapeutic implications.
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| Overall design |
A375-MR1-Cas9 cells were transduced by pooled part A and B GecKO v2 CRISPR library at an MOI of 0.3. Replicates of resultant APCs had a 64-fold representation of each guide within the library and underwent 4 consecutive rounds of killing by TC5A87 T cells at a E:T of 2:1, following which surviving cells were expanded for 24 hrs and genomic DNA extracted for PCR amplicon sequencing.
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| Contributor(s) |
Vacchini A, Chancellor A, Yang Q, Colombo R, Spagnuolo J, Berloffa G, Joss D, Øyås O, Lecchi C, De Simone G, Beshirova A, Nosi V, Loureiro JP, Morabito A, De Gregorio C, Pfeffer M, Schaefer V, Prota G, Zippelius A, Stelling J, Häussinger D, Brunelli L, Villalta P, Lepore M, Davoli E, Balbo S, Mori L, De Libero G |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Oct 29, 2020 |
| Last update date |
May 11, 2024 |
| Contact name |
Gennaro De Libero |
| E-mail(s) |
Gennaro.delibero@unibas.ch
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| Phone |
+41612652327
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| Organization name |
University of Basel
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| Department |
Dept of Biomedicine
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| Lab |
Experimental Immunology
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| Street address |
Hebelstrasse 20
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| City |
Basel |
| ZIP/Postal code |
4031 |
| Country |
Switzerland |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (14)
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| Relations |
| BioProject |
PRJNA673154 |
| SRA |
SRP290277 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE160366_Human_GeCKOv2_Library_A_09Mar2015.csv.gz |
710.3 Kb |
(ftp)(http) |
CSV |
| GSE160366_Human_GeCKOv2_Library_B_09Mar2015.csv.gz |
634.1 Kb |
(ftp)(http) |
CSV |
| GSE160366_RAW.tar |
6.3 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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