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Series GSE166547 Query DataSets for GSE166547
Status Public on Sep 30, 2021
Title Cell type-specific chromatin accessibility in kidney.
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We applied scATAC-seq to construct a cell type-specific epigenetic landscape of kidney at single-cell resolution.
Overall design Single-cell ATAC-seq in human kidney
Contributor(s) Wang Q, Zhang Y, Yang J
Citation(s) 35013217
Submission date Feb 10, 2021
Last update date Jan 12, 2022
Contact name Jingping Yang
Organization name Nanjing University
Department Medical School
Street address 22 Hankou Road
City Nanjing
State/province Jiangsu
ZIP/Postal code 210000
Country China
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (2)
GSM5075549 kidney, sample 1, scATAC-seq
GSM5075552 kidney, sample 2, scATAC-seq
BioProject PRJNA701255
SRA SRP305674

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166547_master_peak.bed.gz 1.4 Mb (ftp)(http) BED
GSE166547_peaks_and_bigwigs.tar.gz 1.2 Gb (ftp)(http) TAR
GSE166547_scATAC_SparseMatrix.rds.gz 184.2 Mb (ftp)(http) RDS
GSE166547_scATAC_barcodes.csv.gz 194.2 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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