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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 30, 2021 |
| Title |
Cell type-specific chromatin accessibility in kidney. |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We applied scATAC-seq to construct a cell type-specific epigenetic landscape of kidney at single-cell resolution.
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| Overall design |
Single-cell ATAC-seq in human kidney
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| Contributor(s) |
Wang Q, Zhang Y, Yang J |
| Citation(s) |
35013217 |
| Submission date |
Feb 10, 2021 |
| Last update date |
Jan 12, 2022 |
| Contact name |
Jingping Yang |
| E-mail(s) |
jpyang@nju.edu.cn
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| Organization name |
Nanjing University
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| Department |
Medical School
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| Street address |
22 Hankou Road
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| City |
Nanjing |
| State/province |
Jiangsu |
| ZIP/Postal code |
210000 |
| Country |
China |
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| Platforms (2) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA701255 |
| SRA |
SRP305674 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE166547_master_peak.bed.gz |
1.4 Mb |
(ftp)(http) |
BED |
| GSE166547_peaks_and_bigwigs.tar.gz |
1.2 Gb |
(ftp)(http) |
TAR |
| GSE166547_scATAC_SparseMatrix.rds.gz |
184.2 Mb |
(ftp)(http) |
RDS |
| GSE166547_scATAC_barcodes.csv.gz |
194.2 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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