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Series GSE200489 Query DataSets for GSE200489
Status Public on Dec 31, 2022
Title Comprehensive microRNA-sequencing of small extracellular vesicles from early-stage HNSCC cases and cancer-free controls with benign neoplastic conditions
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Exosomes are nano-sized (30-150 nm), membrane encapsulated vesicles that are released by cells into the extracellular space and function as intercellular signaling vectors through the horizontal transfer of biologic molecules, including microRNA (miRNA). Although secreted by both normal and malignant cells, there is evidence that cancer-derived exosomes enable the tumor to manipulate its microenvironment, contributing to the capacity of the tumor for immune evasion, growth, invasion, and metastatic spread. The purpose of this study was to apply miRNA-sequencing to exosomes isolated from conditioned culture media to comprehensively characterize miRNA secreted in exosomes from 4 distinct head and neck squamous cell carcinoma (HNSCC) cell lines and normal oral epithelial cells.
 
Overall design Case-control pilot study
 
Contributor(s) Langevin SM, Medvedovic M
Citation(s) 36271833
Submission date Apr 08, 2022
Last update date Apr 01, 2023
Contact name Scott M Langevin
E-mail(s) langevst@uc.edu
Phone 513-558-1066
Organization name University of Cincinnati College of Medicine
Department Department of Environmental Health
Lab Langevin
Street address 160 Panzeca Way, ML0056
City Cincinnati
State/province OH
ZIP/Postal code 45267
Country USA
 
Platforms (1)
GPL15433 Illumina HiSeq 1000 (Homo sapiens)
Samples (32)
GSM6035018 HNSCC Case [DK240]
GSM6035019 HNSCC Case [DK241]
GSM6035020 HNSCC Case [DK242]
Relations
BioProject PRJNA824814

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200489_Processed_miRNAseq_HNSCC_serum.xlsx 89.2 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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