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Series GSE215254 Query DataSets for GSE215254
Status Public on Nov 21, 2022
Title A comparison between novel 3D human renal proximal tubule organoids and 2D monolayer cells utilizing RPTEC-TERT1 cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary This experiment seeks to identify differences in human proximal tubule cells in 2D and 3D in response to nephrotoxins, identify early indications to predict toxicity
 
Overall design 2D v 3D RPTEC-TERT1 cells compared with respect to time and temporal exposure to nephrotoxins cisplatin and cadmium chloride
 
Contributor(s) Vidal Yucha S, Quackenbush D, Chu T, Lo F, Sutherland JJ, Kuzu G, Roberts C, Luna F, Barnes SW, Walker J, Kuss P
Citation(s) 36409750
Submission date Oct 11, 2022
Last update date Nov 22, 2022
Contact name John Walker
E-mail(s) jwalkergnf@gmail.com
Organization name NIBR
Street address 10675 John Jay Hopkins Dr
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platforms (1)
GPL15433 Illumina HiSeq 1000 (Homo sapiens)
Samples (44)
GSM6630440 0hr_control_2D_replicate1_1
GSM6630441 0hr_control_2D_replicate2_2
GSM6630442 0hr_control_2D_replicate3_3
Relations
BioProject PRJNA889436

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE215254_423_DESEQ.xlsx 18.2 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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