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Series GSE215335 Query DataSets for GSE215335
Status Public on Dec 31, 2022
Title Inhibiting Androgen Receptor Splice Variants with Cysteine-Selective Irreversible Covalent Inhibitors to Treat Prostate Cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Prostate cancer (PCa) affects over 250,000 men in the US. Androgen Receptor (AR) signaling inhibitors are the mainstay therapeutics for PCa. Advanced PCa that expresses AR splice variants (AR-SVs) does not respond to current therapeutic strategies. In this manuscript, we uncovered the physicochemical properties of the intrinsically-disordered transactivation domain of AR and AR-SV and developed novel AR irreversible covalent antagonists (SARICA) to the transactivation domain for the treatment of advanced PCa. SARICAs were also used to identify a potential binding region in the AR and AR-SV transactivation domain.
 
Overall design 22RV1 ATAC-Seq and RNA-Seq and LNCaP ATAC-Seq
 
Contributor(s) Narayanan R, Johnson D
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 12, 2022
Last update date Jan 02, 2023
Contact name Daniel Lee Johnson
E-mail(s) djohn166@uthsc.edu
Phone 9014483743
Organization name UTHSC
Department Molecular Informatics Core
Street address 71 S Manassas
City Memphis
State/province Tennessee
ZIP/Postal code 38163
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (18)
GSM6632763 Vehicle 1 ATAC 22RV1
GSM6632764 Vehicle 2 ATAC 22RV1
GSM6632765 Vehicle 3 ATAC 22RV1
Relations
BioProject PRJNA889781

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE215335_RAW.tar 2.2 Gb (http)(custom) TAR (of BW)
GSE215335_cpm_normalized.tsv.gz 699.6 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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