NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE217830 Query DataSets for GSE217830
Status Public on Nov 16, 2022
Title Gene expression signatures of MDCK-pTR GFP-RasV12 mCherry-β-catenin Δ131 cells cultured alone or mixed with MDCK mCherry-β-catenin Δ131 cells
Organism Canis lupus familiaris
Experiment type Expression profiling by array
Summary Normal epithelial cells exert their competitive advantage over RasV12-transformed cells and eliminate them into apical lumen via cell competition. However, it remains elusive which internal or external factors compromise cell competition and provoke oncogenesis. Here, we examine the effect of sequential accumulation of gene mutations mimicking multi-sequential carcinogenesis on RasV12-induced cell competition. Consequently, we find that directionality of cell extrusion of RasV12 cells mosaically produced within Wnt-activated epithelia is reversed, and transformed cells are delaminated into basal lamina via non-cell autonomous MMP21 upregulation. Elevated production of MMP21 is elicited partly through NF-κB signaling, which blockage restores apical elimination of RasV12 cells. Collectively, this study demonstrates that cells with high mutational burdens exploit cell competition for their benefit by behaving as unfit cells and are endowed with an invasion advantage. We performed microarray analysis to search for molecules whose expression is changed in β-catenin Δ131/RasV12 cells surrounded by β-catenin Δ131 cells.
 
Overall design 1.2×10^7 cells of 10:1 mix culture of MDCK mCherry-β-catenin Δ131 and MDCK-pTR GFP-RasV12 mCherry-β-catenin Δ131 cells or a single culture of MDCK-pTR GFP-RasV12 mCherry-β-catenin Δ131 cells were cultured in collagen type I-coated dishes. After incubation with tetracycline for 24 h, GFP-positive cells were collected by an analytical flow cytometer, and total RNA was extracted from the isolated cells.
 
Contributor(s) Nakai K, Kon S
Citation(s) 37923722
Submission date Nov 11, 2022
Last update date Dec 01, 2023
Contact name Shunsuke Kon
E-mail(s) kon44@rs.tus.ac.jp
Phone +81-4-7121-4053
Organization name Tokyo University of Science
Department Research Institute for Biomedical Sciences
Lab Division of Cancer Biology
Street address 2669 Yamazaki
City Noda-shi
State/province Chiba
ZIP/Postal code 278-0022
Country Japan
 
Platforms (1)
GPL15379 Agilent-021193 Canine (V2) Gene Expression Microarray (ProbeName version)
Samples (6)
GSM6727278 Single culture_1
GSM6727279 Single culture_2
GSM6727280 Single culture_3
Relations
BioProject PRJNA900627

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE217830_RAW.tar 25.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap