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Platform GPL15379 Query DataSets for GPL15379
Status Public on Mar 27, 2012
Title Agilent-021193 Canine (V2) Gene Expression Microarray (ProbeName version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Canis lupus familiaris
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description This is the ProbeName version of GPL13605 [Feature Number version]

C. familiaris (Dog) Oligo Microarray (V2)

Arrays of this design have barcodes that begin with 16021193 or 2521193.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Mar 27, 2012
Last update date Mar 08, 2016
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (126) GSM902911, GSM902912, GSM902913, GSM902914, GSM902915, GSM902916 
Series (11)
GSE36848 Acid Stress Increases Gene Expression of Proinflammatory Cytokines in Madin Darby Canine Kidney Cells
GSE43813 The Severe Pathogenicity of Infected Ferrets Depleted of Alveolar Macrophages with 2009 Pandemic H1N1 Influenza Virus
GSE44545 H3N2 canine influenza virus causes severe clinical signs in dogs with induction of genes related to inflammation and apoptosis
Relations
Alternative to GPL13605

Data table header descriptions
ID ProbeName
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID
ORF Gene symbol

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE SPOT_ID ORF
(+)E1A_r60_1 (+)E1A_r60_1 pos CONTROL
(+)E1A_r60_3 (+)E1A_r60_3 pos CONTROL
(+)E1A_r60_a104 (+)E1A_r60_a104 pos CONTROL
(+)E1A_r60_a107 (+)E1A_r60_a107 pos CONTROL
(+)E1A_r60_a135 (+)E1A_r60_a135 pos CONTROL
(+)E1A_r60_a20 (+)E1A_r60_a20 pos CONTROL
(+)E1A_r60_a22 (+)E1A_r60_a22 pos CONTROL
(+)E1A_r60_a97 (+)E1A_r60_a97 pos CONTROL
(+)E1A_r60_n11 (+)E1A_r60_n11 pos CONTROL
(+)E1A_r60_n9 (+)E1A_r60_n9 pos CONTROL
(+)eQC-39 (+)eQC-39 pos CONTROL
(+)eQC-40 (+)eQC-40 pos CONTROL
(+)eQC-41 (+)eQC-41 pos CONTROL
(+)eQC-42 (+)eQC-42 pos CONTROL
(-)3xSLv1 (-)3xSLv1 neg CONTROL
A_11_P000001 A_11_P000001 FALSE ENSCAFT00000000071 ens|ENSCAFT00000000071 chr10:3032814-3032873 olfactory receptor, family 10, subfamily P, member [Source:HGNC Symbol;Acc:15378] [ENSCAFT00000000071] AACAAGGAGGTGGCAAGGGCCCTGCAGCGCATGGTGAAGAGGGAGGTCTCCTCACCATGA
A_11_P0000010 A_11_P0000010 FALSE XM_848975 611318 LOC611318 similar to F55A4.8a Cfa.2541 ENSCAFT00000000298 ens|ENSCAFT00000000298|gb|XM_848975|tc|TC69393 chr1:28838999-28837308 chromosome 6 open reading frame 192 [Source:HGNC Symbol;Acc:21573] [ENSCAFT00000000298] CATCTCTGCTGGGAAGAGTATAATTCCAACTATCCCGGAGATCCTCAGTTGTGCATATGA LOC611318
A_11_P00000100 A_11_P00000100 FALSE XM_846583 Cfa.21391 ENSCAFT00000002787 ens|ENSCAFT00000002787|gb|XM_846583|tc|TC76630 chr14:014867491-014867435 leiomodin 2 (cardiac) [Source:HGNC Symbol;Acc:6648] [ENSCAFT00000002787] GCTCAGGGACAACACGACGCTGCTGAGGCTGGGGCTACCCACTTCGAGCCTCCCGGGACC
A_11_P000001000 A_11_P000001000 FALSE XM_846910 610026 NAE1 NEDD8 activating enzyme Esubunit 1 Cfa.39474 ENSCAFT00000032493 ens|ENSCAFT00000032493|gb|XM_846910|tc|TC77843 chr5:85480882-85480941 NEDD8 activating enzyme Esubunit [Source:HGNC Symbol;Acc:621] [ENSCAFT00000032493] GATAAACCATTTCCTGAACTGAGAGAACATTTTCAGTCTTATGATTTGGATCGTATGGAA NAE1
A_11_P0000010000 A_11_P0000010000 FALSE CO626098 Cfa.35376 gb|CO626098 chr37:16857989-16853253 DG9-270f8 DG9-ovary Canis familiaris cDNA 3', mRNA sequence [CO626098] TTACAGAACACCCTTCAAGGTCCATGCTCTTTGAGGCTTTCAGATTCATTGATTCGGGCT

Total number of rows: 43663

Table truncated, full table size 12457 Kbytes.




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