GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE226688
Query DataSets for GSE226688
Status
Public on Nov 11, 2023
Title
The alternative Nucleosome Remodeling Factor complex sustains acute myeloid leukemia by regulating the accessibility of insulator regions
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37987160
Submission date
Mar 06, 2023
Last update date
Feb 10, 2024
Contact name
Aliaksandra Radzisheuskaya
E-mail(s)
ar570a@gmail.com
Organization name
The Institute of Cancer Research
Department
Cancer Biology
Street address
237 Fulham road
City
London
ZIP/Postal code
SW36JB
Country
United Kingdom
Platforms (4)
Less...
More...
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
GPL30173
NextSeq 2000 (Homo sapiens)
Samples (60)
Less...
More...
GSM7081316
ATAC_exp1_sgNegCtrl_rep1
GSM7081317
ATAC_exp1_sgNegCtrl_rep2
GSM7081318
ATAC_exp1_sgBPTF-1_rep1
GSM7081319
ATAC_exp1_sgBPTF-1_rep2
GSM7081320
ATAC_exp1_sgBPTF-2_rep1
GSM7081321
ATAC_exp1_sgBPTF-2_rep2
GSM7081322
ATAC_exp2_sgNegCtrl_rep1
GSM7081323
ATAC_exp2_sgNegCtrl_rep2
GSM7081324
ATAC_exp2_sgSMARCA5_rep1
GSM7081325
ATAC_exp2_sgSMARCA5_rep2
GSM7081326
CR_exp1_sgNegCtrl_aBPTF_rep1
GSM7081327
CR_exp1_sgNegCtrl_aBPTF_rep2
GSM7081328
CR_exp1_sgBPTF_aBPTF_rep1
GSM7081329
CR_exp1_sgBPTF_aBPTF_rep2
GSM7081330
CR_exp2_SA5KI_aHA_DMSO_rep1
GSM7081331
CR_exp2_SA5KI_aHA_DMSO_rep2
GSM7081332
CR_exp2_SA5KI_aHA_dTAG_rep1
GSM7081333
CR_exp2_SA5KI_aHA_dTAG_rep2
GSM7081334
CR_exp3_wtBPTF_aBPTF_rep1
GSM7081335
CR_exp3_wtBPTF_aBPTF_rep2
GSM7081336
CR_exp3_deltaPHDBROMO-BPTF_aBPTF_rep1
GSM7081337
CR_exp3_deltaPHDBROMO-BPTF_aBPTF_rep2
GSM7081338
CR_exp3_deltaBROMO-BPTF_aBPTF_rep1
GSM7081339
CR_exp3_deltaBROMO-BPTF_aBPTF_rep2
GSM7081346
HiC_sgNegCtrl_rep1
GSM7081347
HiC_sgNegCtrl_rep2
GSM7081348
HiC_sgBPTF_rep1
GSM7081349
HiC_sgBPTF_rep2
GSM7081350
HiC_sgSMARCA5_rep1
GSM7081351
HiC_sgSMARCA5_rep2
GSM7081674
RNA_sgNegCtrl_rep1
GSM7081675
RNA_sgNegCtrl_rep2
GSM7081676
RNA_sgNegCtrl_rep3
GSM7081677
RNA_sgBPTF-1_rep1
GSM7081678
RNA_sgBPTF-1_rep2
GSM7081679
RNA_sgBPTF-1_rep3
GSM7081680
RNA_sgBPTF-2_rep1
GSM7081681
RNA_sgBPTF-2_rep2
GSM7081682
RNA_sgBPTF-2_rep3
GSM7784295
ATAC_SA5KI_DMSO_rep1
GSM7784296
ATAC_SA5KI_DMSO_rep2
GSM7784297
ATAC_SA5KI_dTAGV1_4hrs_rep1
GSM7784298
ATAC_SA5KI_dTAGV1_4hrs_rep2
GSM7784311
CTCF-CR_experiment1_BPTF-KO
GSM7784312
CTCF-CR_experiment1_NegCtrl
GSM7784313
CTCF-CR_experiment1_SMARCA5-KO
GSM7784314
CTCF-CR_experiment2_BPTF-KO_rep1
GSM7784315
CTCF-CR_experiment2_NegCtrl_rep1
GSM7784316
CTCF-CR_experiment2_SMARCA5-KO_rep1
GSM7784317
CTCF-CR_experiment2_BPTF-KO_rep2
GSM7784318
CTCF-CR_experiment2_NegCtrl_rep2
GSM7784319
CTCF-CR_experiment2_SMARCA5-KO_rep2
GSM7784320
CTCF-CR-U937
GSM7784321
BPTF-CR-U937
GSM7784322
SMARCA5-CR-U937
GSM7784323
IgG-CR-U937
GSM7784324
CTCF-CR-OCIAML2
GSM7784325
BPTF-CR-OCIAML2
GSM7784326
SMARCA5-CR-OCIAML2
GSM7784327
IgG-CR-OCIAML2
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE226670
The alternative Nucleosome Remodeling Factor complex sustains acute myeloid leukemia by regulating the accessibility of insulator regions (ATAC-seq)
GSE226671
The alternative Nucleosome Remodeling Factor complex sustains acute myeloid leukemia by regulating the accessibility of insulator regions (Cut&Run)
GSE226673
The alternative Nucleosome Remodeling Factor complex sustains acute myeloid leukemia by regulating the accessibility of insulator regions (Hi-C)
GSE226687
The alternative Nucleosome Remodeling Factor complex sustains acute myeloid leukemia by regulating the accessibility of insulator regions (RNA-seq)
Relations
BioProject
PRJNA941232
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE226688_RAW.tar
4.3 Gb
(http)
(custom)
TAR (of BIGWIG, BW)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
Less...
More...