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| Status |
Public on Apr 24, 2024 |
| Title |
Gene expression in NCI-H1299 cells infected with shCtrl and shRPL35A |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Gene expression in NCI-H1299 cells infected with shCtrl and shRPL35A was detected with a PrimeView human gene expression array.
Gene expression profiling of shCtrl and shRPL35A NCI-H1299 cells was acquired and analyzed. Differentially expressed genes were identified based on fold change of mean of expression (fold change ≥ 1.3) and FDR (< 0.05) from P value calculated based on linear model of empirical Bayesian distribution. Finally, 2055 upregulated genes and 1559 downregulated genes were characterized.
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| Overall design |
Gene expression in shRPL35A NCI-H1299 cells and control NCI-H1299 cells was detection using Human gene expression array. Firstly, total RNA was extracted and RNA quality and integrity was determined by Nanodrop 2000 (Thremo Fisher Scientific) and Agilent 2100 and Agilent RNA 6000 Nano Kit (Agilent). Then, RNA sequencing was performed with Affymetrix human GeneChip PrimeView According to the instructions. The outcomes were scanned by Affymetrix Scanner 3000. Raw Data filtering was completed by using a Welch t-test with Benjamini-Hochberg FDR (|Fold Change| ≥ 1.3 and FDR < 0.05 as significant). Finally, Ingenuity Pathway Analysis (IPA) (Qiagen, Hilden, Germany) was executed and |Z - score| ≥ 2 is considered valuable.
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| Contributor(s) |
Yan L, Zhang X |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Apr 19, 2024 |
| Last update date |
Apr 24, 2024 |
| Contact name |
Liqin Yan |
| E-mail(s) |
syyyylq@d.sxmu.edu.cn, YLQ691450@163.com
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| Phone |
+8613834691450
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| Organization name |
Shanxi Medical University
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| Street address |
Jiefang Road
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| City |
Taiyuan |
| ZIP/Postal code |
030000 |
| Country |
China |
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| Platforms (1) |
| GPL15207 |
[PrimeView] Affymetrix Human Gene Expression Array |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA1102391 |
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