|
| Status |
Public on Apr 15, 2013 |
| Title |
Identification of RVE8 target genes |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The goal of this study is to identify the targets of RVE8, a MYB-like transcription factor involved in the circadian clock in Arabidopsis. Analysis of 7 days old rve8-1 RVE8::RVE8:GR and rve8-1 seedlings treated with dexamethasone or mock identified genes responsive to RVE8 induction.The RVE8 up-regulated genes are enriched for evening-phased genes while the down-regulated genes are enriched for a morning phase. This study reveals that RVE8 is a master regulator of circadian gene expression in Arabidopsis.
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| |
|
| Overall design |
Transgenic line rve8-1 RVE8::RVE8:GR and rve8-1 treated with DEX or mock with three biological replicates each, 12 samples in total.
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| |
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| Contributor(s) |
Hsu PY, Harmer SL |
| Citation(s) |
23638299 |
| Submission date |
Jun 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Polly Yingshan Hsu |
| Organization name |
Duke University
|
| Department |
Biology
|
| Lab |
Philip Benfey
|
| Street address |
Duke University
|
| City |
Durham |
| State/province |
NC |
| ZIP/Postal code |
27708 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (12)
|
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| Relations |
| BioProject |
PRJNA169134 |
| SRA |
SRP013873 |
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