|
| Status |
Public on Oct 01, 2012 |
| Title |
Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
We mapped CstF64-RNA interactions at the transcriptome level and studied CstF64-mediated regulation of global mRNA alternative polyadenylation by using iCLIP-seq and direct RNA sequencing analyses.
|
| |
|
| Overall design |
CstF64 iCLIP-seq in HeLa cells; direct RNA sequencing (DRS) of control HeLa cells, CstF64-RNAi cells and CstF64&CstF64tau-RNAi cells
|
| |
|
| Contributor(s) |
Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y |
| Citation(s) |
23112178 |
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Yongsheng Shi |
| E-mail(s) |
yongshes@uci.edu
|
| Phone |
9498240358
|
| Organization name |
University of California, Irvine
|
| Department |
Microbiology and Molecular Genetics
|
| Street address |
B228 Med Sci I
|
| City |
Irvine |
| State/province |
CA |
| ZIP/Postal code |
92697 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL14761 |
Helicos HeliScope (Homo sapiens) |
|
| Samples (6)
|
| GSM1003590 |
direct RNA sequencing (DRS) of control HeLa cells |
| GSM1003591 |
direct RNA sequencing (DRS) of CstF64-RNAi cells |
| GSM1003592 |
direct RNA sequencing (DRS) of CstF64&t-RNAi cells |
|
| Relations |
| BioProject |
PRJNA175123 |
| SRA |
SRP015741 |
Less...
More...