|
| Status |
Public on Mar 16, 2016 |
| Title |
Time-course transcriptome of wild-type Arabidopsis leaf |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
During the senescence stage, leaves undergo degeneration and relocate nutrients accumulated during the growth stage to sink parts such as seeds, critically contributing to plants’ productivity and fitness. Here, we asked how leaf transcriptome is regulated during the senescence stage by performing directional sequencing of total and small RNAs for the entire lifespan of Arabidopsis leaves.
|
| |
|
| Overall design |
The total RNA and small RNA profiles of the Arabidopsis leaf along lifespan (14 and 7 time points, respectively) were generated by next-generation sequencing using Illumina Hiseq2000. Two independent biological replicates were used for each experiment.
|
| |
|
| Contributor(s) |
Woo H, Koo H, Kim J, Jeong H, Lim P, Hwang D, Nam H |
| Citation(s) |
26966169 |
| Submission date |
Jan 18, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Hee Jung Koo |
| E-mail(s) |
hooferlm@postech.ac.kr
|
| Phone |
82-10-90976741
|
| Organization name |
Pohang University of Science and Technology
|
| Street address |
Hyojadong San 31
|
| City |
Pohang |
| ZIP/Postal code |
790-784 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (42)
|
|
| Relations |
| BioProject |
PRJNA186843 |
| SRA |
SRP018034 |
Less...
More...