|
| Status |
Public on Mar 01, 2013 |
| Title |
Genome-wide Analysis Reveals SR Protein Cooperation and Competition in Regulated Splicing |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
|
| Summary |
Global analyses of two prototypical SR proteins (SRFS1 and SFRS2 using splicing-sensitive arrays and CLIP-seq on mouse embryo fibroblasts carrying tet-repressible versions of the two genes.
|
| |
|
| Overall design |
4 biological replicate sets of SFRS1 or SFRS2 tet-repressible MEFs were grown for 5 days -/+ docycline. Total RNA was isolated and labeled targets hybridized to Affymetrix mouse splicing arrays. This is the gene expression component of the study only.
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| |
|
| Contributor(s) |
Pandit S, Shiue L, Ares M, Fu X |
| Citation(s) |
23562324 |
| Submission date |
Feb 22, 2013 |
| Last update date |
Apr 12, 2013 |
| Contact name |
Lily Shiue |
| E-mail(s) |
lshiue@ucsc.edu
|
| Phone |
831-459-2612
|
| Organization name |
UCSC
|
| Department |
MCD Biology
|
| Lab |
Ares
|
| Street address |
1156 High Street
|
| City |
Santa Cruz |
| State/province |
CA |
| ZIP/Postal code |
95064 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13185 |
[mjay] Custom Affymetrix Mouse Exon Junction Array |
|
| Samples (16)
|
|
| Relations |
| BioProject |
PRJNA190106 |
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