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| Status |
Public on Dec 31, 2016 |
| Title |
The self-renewal of gastric cancer stem cells is regulated by a specific collaboration between the microenvironment and the genetic condition. |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by SNP array
|
| Summary |
Because cancer stem cells already had genetic and epigenetic alterations which can affect the self-renewal, we tried to characterize genetic and epigenetic changes of the gastric cancer stem cells. To do this, we performed SNP array, MBD sequencing and RNA sequencing.
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| Overall design |
copy number alteration profiles of Normal tissue and gastric cancer stem cell were generated by SNP6.0 Array, in three patients(csc1,csc2,csc3).
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| Contributor(s) |
Oh S, Kim S, Baek S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 02, 2013 |
| Last update date |
Nov 27, 2018 |
| Contact name |
sujin Baek |
| E-mail(s) |
sujins84@kribb.re.kr
|
| Phone |
+82-10-7494-2876
|
| Organization name |
KRIBB
|
| Department |
MGRC
|
| Street address |
Gwahank-ro 125
|
| City |
Daejeon |
| ZIP/Postal code |
305-806 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL6801 |
[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array |
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| Samples (10)
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| This SubSeries is part of SuperSeries: |
| GSE46598 |
Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer |
|
| Relations |
| BioProject |
PRJNA201425 |
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