|
| Status |
Public on Dec 31, 2016 |
| Title |
csc1_sc3__snp6.0 |
| Sample type |
genomic |
| |
|
| Source name |
gastric cancer stem cell (csc1-clone3)
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: gastric cancer stem cell
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Standard DNA preparation protocol using Qiagen's DNA prep kit
|
| Label |
biotin
|
| Label protocol |
As per manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
Each array according to the manufacturer`s instruction
|
| Scan protocol |
Each array according to the manufacturer`s instruction
|
| Description |
gastric cancer stem cell (csc1-clone3)
|
| Data processing |
Copy number values for individual SNPs were extracted and converted from CEL files into signal intensities using Genotypeing Console software. Circular Binary segmentation was applied using DNAcopy package for R Bioconductor on raw data.
|
| |
|
| Submission date |
Dec 02, 2013 |
| Last update date |
Dec 31, 2016 |
| Contact name |
sujin Baek |
| E-mail(s) |
sujins84@kribb.re.kr
|
| Phone |
+82-10-7494-2876
|
| Organization name |
KRIBB
|
| Department |
MGRC
|
| Street address |
Gwahank-ro 125
|
| City |
Daejeon |
| ZIP/Postal code |
305-806 |
| Country |
South Korea |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE46594 |
The self-renewal of gastric cancer stem cells is regulated by a specific collaboration between the microenvironment and the genetic condition. |
| GSE46598 |
Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer |
|
