NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE48309 Query DataSets for GSE48309
Status Public on Aug 07, 2013
Title Global small RNA analysis in fast-growing Arabidposis thaliana with elevated level of ATP and sugars
Organism Arabidopsis thaliana
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary The sRNA profiles of the leaf and the root of 20-day-old plants were sequenced and the impacts of high energy status on sRNA expression were analyzed
 
Overall design 8 samples consisting of wild type, overexpressed line 7 and 21, and AtPAP2-mutant.
 
Contributor(s) Liang C, Liu X, Yiu S, Lim B
Citation(s) 24507710
Submission date Jun 26, 2013
Last update date May 15, 2019
Contact name Anna Liu
E-mail(s) xliu@cs.hku.hk
Organization name HKU
Department CS
Street address Pokfulam Road
City Hong Kong
State/province Hong Kong
ZIP/Postal code N.A.
Country Hong Kong
 
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (8)
GSM1174493 OE21 shoot
GSM1174494 OE7 shoot
GSM1174495 T-DNA shoot
Relations
BioProject PRJNA209644
SRA SRP026334

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48309_RAW.tar 160.1 Mb (http)(custom) TAR (of FA)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap