|
| Status |
Public on Mar 18, 2014 |
| Title |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis (small RNA-seq) |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Utilizing whole-genome sRNA-seq to analyze transposon derived siRNAs in DNA methylation mutants, and RNAi mutants, compared to wildtype.
|
| |
|
| Overall design |
Total RNA extracted from plant inflorescence tissue, small RNA sequenced Illumina HiSeq, read size 18-nt to 26-nt, mapping with Bowtie (Tuxedo)
|
| |
|
| Contributor(s) |
Creasey KM, Martienssen RA |
| Citation(s) |
24670663 |
| Submission date |
Dec 03, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Kate M Creasey |
| Organization name |
Cold Spring Harbor Laboratory
|
| Department |
Plant Sciences
|
| Street address |
1 Bungtown Road
|
| City |
Cold Spring Harbor |
| State/province |
NY |
| ZIP/Postal code |
11724 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (9)
|
|
| This SubSeries is part of SuperSeries: |
| GSE52952 |
miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis |
|
| Relations |
| BioProject |
PRJNA230527 |
| SRA |
SRP033469 |
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