|
| Status |
Public on Dec 04, 2014 |
| Title |
DNA binding activities of the C-clamp |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Investigated the DNA binding specificity of the C-clamp of dnTCF1E
|
| |
|
| Overall design |
Used a doxycycline inducible system to investigate the role of the C-clamp in the genome-wide binding of dnTCF1E. Induced dnTCF1EWT and dnTCF1Emut (C-clamp mutant that is null for C-clamp DNA binding) over 2 time points (2 hours and 9 hours). A 0 hour (no doxycycline, uninduced) control was also included.
|
| |
|
| Contributor(s) |
Hoverter NP, Zeller M, Baldi P, Waterman ML |
| Citation(s) |
25414359 |
| Submission date |
Dec 20, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Michael Zeller |
| E-mail(s) |
zellerm@uci.edu
|
| Organization name |
University of California, Irvine
|
| Department |
Computer Science
|
| Lab |
Pierre Baldi
|
| Street address |
241 ICS 2
|
| City |
Irvine |
| State/province |
California |
| ZIP/Postal code |
92697 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (8)
|
|
| Relations |
| BioProject |
PRJNA232323 |
| SRA |
SRP034659 |
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