|
| Status |
Public on Jun 01, 2014 |
| Title |
CATseq a comparative Arabidopsis Transcriptome - RNA-Seq part |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
A comparative assessment between both technologies, RNASeq and
microarrays to detect differential expression in Arabidopsis transcriptome.
The sequencing approach use High-throughput sequencing on different Solexa technologies (GAII,HiSeq2000 multiplex or not)
Wild type samples were analyzed from 2 tissus (flower buds and leaves)
which have a very contrasted transcriptomic profile
(i.e very high number of genes differentially expressed).
|
| |
|
| Overall design |
The RNA was extracted from 2 tissus Flower Buds and Leaves from Arabidopsis. The associated GEO series with array part is GSE45345
|
| |
|
| Contributor(s) |
Balzergue S, Blondet E, Brunaud V, Martin-Magniette M, Delannoy E |
| Citation(s) |
27742662 |
| Submission date |
Dec 27, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Véronique BRUNAUD |
| E-mail(s) |
veronique.brunaud@inrae.fr
|
| Organization name |
INRA - CNRS - UPSUD
|
| Lab |
IPS2
|
| Street address |
rue Noetzlin
|
| City |
Gif-sur-Yvette |
| ZIP/Postal code |
91190 |
| Country |
France |
| |
|
| Platforms (2) |
| GPL11221 |
Illumina Genome Analyzer IIx (Arabidopsis thaliana) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (11)
|
|
| Relations |
| BioProject |
PRJNA232621 |
| SRA |
SRP034742 |
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