|
| Status |
Public on Jan 30, 2016 |
| Title |
mRNA profiling of Hepatocellular carcinoma (HCC) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We did mRNA profiling and showed that an interferon-inducible gene's deletion and under-expression is significantly associated with shorter time to tumor recurrence, shorter progression-free survival, and shorter overall survival in HCC patients.
|
| |
|
| Overall design |
We got the samples from HCC patients' matched primary and recurrent tumors (n=10) and primary tumors from non-recurrent patients (n=15), we conducted the RNAseq of those samples, and did the comparison.
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| |
|
| Contributor(s) |
Brandon H, Shen D |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Apr 07, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Dong Shen |
| E-mail(s) |
shend@medimmune.com
|
| Phone |
301-398-1269
|
| Organization name |
Medimmune
|
| Department |
Translational Science
|
| Lab |
Pharmacogenomics
|
| Street address |
MedImmune Way
|
| City |
Gaithersburg |
| State/province |
MD |
| ZIP/Postal code |
21878 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL15433 |
Illumina HiSeq 1000 (Homo sapiens) |
|
| Samples (42)
|
|
| Relations |
| BioProject |
PRJNA243866 |
| SRA |
SRP040998 |
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