|
| Status |
Public on Jun 18, 2014 |
| Title |
Genome-wide map of long non-coding RNA steroid receptor RNA activator (SRA) and its associated RNA heliase p68 in human pluripotent stem cells NTERA2 |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We performed Chromatin Isolation by RNA Purification (ChIRP) of SRA and ChIP of p68 following by high-throughput sequencing in NTERA2 cell line. We find that SRA localizes with p68 genome-wide at genes whose function is involved in embryonic development.
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| |
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| Overall design |
SRA ChIRP and p68 ChIP of triplicate samples.
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| |
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| Contributor(s) |
Felsenfeld G, Wongtrakoongate P, Riddick G |
| Citation(s) |
26496121 |
| Submission date |
Jun 18, 2014 |
| Last update date |
Jan 13, 2021 |
| Contact name |
Gary Felsenfeld |
| E-mail(s) |
garyf@intra.niddk.nih.gov
|
| Organization name |
NIDDK, NIH
|
| Lab |
LMB
|
| Street address |
9000 Rockville Pike
|
| City |
BETHESDA |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA253062 |
| SRA |
SRP043389 |
