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Status |
Public on Jun 18, 2014 |
Title |
p68 ChIP-seq |
Sample type |
SRA |
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Source name |
NTERA2
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Organism |
Homo sapiens |
Characteristics |
cell line: NTERA2 pluripotent stem cell line chip antibody: p68 antibody (Bethyl Laboratories, catalog# A300-523A, lot# A300-523A-1)
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Growth protocol |
DMEM with 10% FBS
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Extracted molecule |
genomic DNA |
Extraction protocol |
Sheared chromatin was pulled down by SRA probes or p68 antibody. Library was prepared using MicroPlex Library Preparation kit (Diagenode, C05010010).
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina HiSeq 2500 |
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Description |
Sample 2
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Data processing |
Basecalls performed using RTA v1.17.21.3 Demultiplexing and alignment using CASAVA package v1.8.2, which uses the aligner ELANDv2 Peak calling performed using MACS1.4, which generated bed files Genome_build: hg19 Supplementary_files_format_and_content: bed files report MACS peaks
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Submission date |
Jun 18, 2014 |
Last update date |
May 15, 2019 |
Contact name |
Gary Felsenfeld |
E-mail(s) |
garyf@intra.niddk.nih.gov
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Organization name |
NIDDK, NIH
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Lab |
LMB
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Street address |
9000 Rockville Pike
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City |
BETHESDA |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
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Platform ID |
GPL16791 |
Series (1) |
GSE58641 |
Genome-wide map of long non-coding RNA steroid receptor RNA activator (SRA) and its associated RNA heliase p68 in human pluripotent stem cells NTERA2 |
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Relations |
BioSample |
SAMN02866395 |
SRA |
SRX610813 |
Supplementary file |
Size |
Download |
File type/resource |
GSM1415923_NTERA2_p68.bed.gz |
122.2 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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