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Series GSE58940 Query DataSets for GSE58940
Status Public on Jul 15, 2014
Title Development of peptidomimetic inhibitors of the ERG gene fusion product in prostate cancer (expression)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Transcription factors play a key role in the development of diverse cancers, and therapeutically targeting them has remained a challenge. In prostate cancer, the gene encoding the transcription factor ERG is recurrently rearranged and plays a critical role in prostate oncogenesis. Here, we identified a series of peptides that interact specifically with the DNA binding domain of ERG. The most prevalent consensus peptide series matched the tumor suppressor Deleted in Liver Cancer 1 (DLC1). ERG inhibitory peptides and derived peptidomimetics (EIPs) bound with high affinity and specificity leading to proteolytic degradation of ERG. The EIPs attenuated ERG-mediated transcription, chromatin recruitment, protein-protein interactions, cell invasion, and tumor growth. Thus, peptidomimetic targeting of transcription factor fusion products may provide a promising therapeutic strategy for prostate cancer as well as other cancers.
 
Overall design ERG genes in VCaP cell were knocked down by siERG or siControls for 48 hrs. Biological replicates: 2 control replicates, 2 experimental replicates. ERG proteins were destablized by RI-EIP1 or RI-muEIP1 for 72 hours. Biological replicates: 2 control replicates, 2 experimental replicates.
 
Contributor(s) Wang X, Jing X
Citation(s) 28344039
Submission date Jun 30, 2014
Last update date Oct 24, 2019
Contact name Xiaoju Wang
E-mail(s) xiaojuw@umich.edu
Phone 734-763-6056
Organization name University of Michigan
Street address 1500 E. Medical Center Drive
City Ann Arbor
State/province MI
ZIP/Postal code 48109
Country USA
 
Platforms (1)
GPL4133 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
Samples (4)
GSM2338062 VCaP siERG Replicate 1
GSM2338063 VCaP siERG Replicate 2
GSM2338064 VCaP RI-EIP1 Treatment Replicate 1
This SubSeries is part of SuperSeries:
GSE58975 Development of peptidomimetic inhibitors of the ERG gene fusion product in prostate cancer
Relations
BioProject PRJNA254032

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE58940_RAW.tar 63.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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