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| Status |
Public on May 13, 2015 |
| Title |
Sox9 controls self-renewal of oncogene targeted cells and links tumor initiation and invasion [ChIP-Seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Sox9 is a transcription factor expressed in most solid tumors. However, the molecular mechanisms underlying Sox9 function during tumorigenesis remain unclear. Here, using a genetic mouse model of basal cell carcinoma (BCC), the most frequent cancer in human, we show that Sox9 is expressed from the earliest step of tumor formation in a Wnt/β-catenin dependent manner. Deletion of Sox9 together with the constitutive activation of Hedgehog (HH) signaling completely prevents BCC formation and leads to a progressive loss of oncogene expressing cells. Transcriptional profiling of oncogene expressing cells with Sox9 deletion, combined with in vivo ChIP-sequencing uncovers a cancer-specific gene network regulated by Sox9 that promotes stemness, extracellular matrix (ECM) deposition and cytoskeleton remodeling while repressing epidermal differentiation. Our study identifies the molecular mechanisms regulated by Sox9 that links tumor initiation and invasion.
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| |
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| Overall design |
Sox9 ChIP-seq analysis in K14CreER SmoM2 cells.
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| Contributor(s) |
Larsimont J, Defrance M, Blanpain C |
| Citation(s) |
26095047 |
| Submission date |
May 11, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Jean-Christophe Larsimont |
| E-mail(s) |
jclarsim@gmail.com
|
| Organization name |
Université Libre de Bruxelles (ULB)
|
| Department |
Faculté de médecine
|
| Lab |
Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire (IRIBHM)
|
| Street address |
808, route de Lennik
|
| City |
Brussels |
| State/province |
Brussels |
| ZIP/Postal code |
1070 |
| Country |
Belgium |
| |
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| Platforms (1) |
| GPL16173 |
Illumina HiScanSQ (Mus musculus) |
|
| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE68756 |
Sox9 controls self-renewal of oncogene targeted cells and links tumor initiation and invasion |
|
| Relations |
| SRA |
SRP058194 |
| BioProject |
PRJNA283897 |
