|
| Status |
Public on Aug 01, 2015 |
| Title |
RNA Proximity Ligation to Resolve Intramolecular RNA Structures in situ |
| Organisms |
Saccharomyces cerevisiae; Homo sapiens |
| Experiment type |
Other
|
| Summary |
Proof-of-concept of a new method involving the limited digestion and subsequent ligation of intramolecular RNA structures in situ followed by deep sequencing
|
| |
|
| Overall design |
Proof-of-concept of RPL in S. cerevisiae and H. sapiens tissue culture
|
| |
|
| Contributor(s) |
Shendure J, Ramani V |
| Citation(s) |
26237516 |
| Submission date |
Jun 02, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Vijay Ramani |
| Organization name |
UCSF
|
| Department |
Biochemistry & Biophysics
|
| Lab |
Ramani Lab
|
| Street address |
600 16th St, GH-S312B
|
| City |
San Francisco |
| State/province |
California |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
|
| Platforms (5)
|
| GPL13821 |
Illumina HiSeq 2000 (Saccharomyces cerevisiae) |
| GPL17143 |
Illumina MiSeq (Saccharomyces cerevisiae) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL19756 |
Illumina NextSeq 500 (Saccharomyces cerevisiae) |
| GPL20276 |
Illumina NextSeq 500 (Homo sapiens; Saccharomyces cerevisiae) |
|
| Samples (13)
|
|
| Relations |
| BioProject |
PRJNA285680 |
| SRA |
SRP058976 |
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