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| Status |
Public on Mar 17, 2016 |
| Title |
Dicer-independent RNA-directed DNA methylation in Arabidopsis [methylC-seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Methylation profiling by high throughput sequencing
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| Summary |
Using MethylC-Seq to provide single-base resolution of DNA methylation status in Col-0 and some RdDM mutants
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| Overall design |
MethylC-Seq: 8 mutants examined, nrpd1-3, nrpe1-11, dcl2/3/4, rdr1/2/6, ddc, met1-1, dcl1-100, ago4/6
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| Contributor(s) |
Yang D, Tang K, Zhu J |
| Citation(s) |
26642813 |
| Submission date |
Jul 14, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Jian-Kang Zhu |
| E-mail(s) |
zhu132@purdue.edu
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| Organization name |
Purdue University
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| Department |
Department of Horticulture and Landscape Architecture
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| Street address |
625 Agriculture Mall Dr.
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| City |
West Lafayette |
| State/province |
IN |
| ZIP/Postal code |
47907 |
| Country |
USA |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (23)
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| Relations |
| BioProject |
PRJNA289907 |
| SRA |
SRP061167 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE70912_RAW.tar |
600.9 Mb |
(http)(custom) |
TAR (of WIG) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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