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| Status |
Public on Oct 01, 2022 |
| Title |
Identification of SMXL4- and SMXL5-dependent genes in comparison to the SMAX1-dependent genes |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We used RNA-seq to generate the transcriptional profile of 7 days old WT, smxl5-1, smxl4-1 smxl5-1 and smax1-2 Arabidopsis mutant seedlings. We then used statistical analysis to identify differentially expressed genes that potentially contribute to the smxl5-1, smxl4-1 smxl5-1 and smax1-2 mutant phenotype.
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| Overall design |
RNA from three replicates each of WT and smxl5-1, smxl4-1 smxl5-1 and smax1-2 mutants were sequenced and differentially expressed genes were identified by using the DESeq2 package.
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| Contributor(s) |
Wallner E, Jouannet V, Greb T |
| Citation missing |
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| Submission date |
Jul 29, 2015 |
| Last update date |
Oct 02, 2022 |
| Contact name |
Thomas Greb |
| E-mail(s) |
thomas.greb@cos.uni-heidelberg.de
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| Organization name |
Heidelberg University
|
| Department |
Centre for Organismal Studies
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| Lab |
Greb
|
| Street address |
Im Neuenheimer Feld 360
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| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA291424 |
| SRA |
SRP061781 |
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