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| Status |
Public on Sep 17, 2016 |
| Title |
Transcriptome analysis of diverse cell types infected with human cytomegalovirus [array] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Comprehensive RNA sequencing and splicing-sensitive microarray analysis of three diverse cell types infected with human cytomegalovirus (HCMV), including primary fibroblasts (HFFs), endothelial cells (ECs), and neural progenitors (NPCs) derived from embryonic stem cells. This global analysis includes both host and viral gene expression measurements, and an in-depth assessment of alternative RNA processing events. Extended comparisons were conducted through RNA sequencing analysis of human herpes simplex virus (HSV)-2 and human immunodeficiency virus type 1 (HIV-1) infections.
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| Overall design |
Alternative host splicing analysis component of the study. This data subset was derived from triplicate sets of cell culture that were each subjected to splice-junction arrays.
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| Contributor(s) |
Stark TJ, Batra R, Yeo GW |
| Citation(s) |
27775709 |
| Submission date |
Oct 08, 2015 |
| Last update date |
Jun 15, 2017 |
| Contact name |
Gene Yeo |
| E-mail(s) |
geneyeo@ucsd.edu
|
| Organization name |
UCSD
|
| Street address |
2880 Torrey Pines Scenic Dr. Room 3805/Yeo Lab
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92037 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL15106 |
[hjay] Affymetrix GeneChip Human HJAY Array |
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| Samples (18)
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| This SubSeries is part of SuperSeries: |
| GSE74250 |
Transcriptome analysis of diverse cell types infected with human cytomegalovirus |
|
| Relations |
| BioProject |
PRJNA299677 |
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