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| Status |
Public on Sep 05, 2017 |
| Title |
Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer [ChIP-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Acetylation of the histone variant H2A.Z (H2A.Zac) occurs at active promoters and is associated with oncogene activation in prostate cancer, but its role in enhancer function is still poorly understood. Here we show that H2A.Zac containing nucleosomes are commonly redistributed to neo-enhancers in cancer resulting in a concomitant gain of chromatin accessibility and ectopic gene expression. Notably incorporation of acetylated H2A.Z nucleosomes is a pre-requisite for activation of Androgen receptor (AR) associated enhancers. H2A.Zac nucleosome occupancy is rapidly remodelled to flank the AR sites to initiate the formation of nucleosome-free regions and the production of AR-enhancer RNAs upon androgen treatment. Remarkably higher levels of global H2A.Zac correlate with poorer prognosis. Together these data demonstrate the novel contribution of H2A.Zac in activation of newly formed enhancers in prostate cancer.
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| Overall design |
Genome-wide binding analyses of H2A.Z and H2A.Zac in PrEC, LNCaP full media and LNCaP with or without DHT (5alpha-dihydrotestosterone) stimulation (0, 2h, 4h, 16h) using ChIP-Seq, as well as ChIP-seq for 6 histone marks to partition the genome in LNCaP/PrEC cells into different states.
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| Contributor(s) |
Valdes-Mora F, Gould CM, Colino-Sanguino Y, Buske FA, Statham AL, Nair SS, Clark SJ |
| Citation(s) |
29116202 |
| Submission date |
Dec 24, 2015 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Fatima Valdes Mora |
| E-mail(s) |
f.valdesmora@garvan.org.au
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| Phone |
+61 2 92958334
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| Organization name |
Garvan Institute of Medical Research
|
| Department |
Genomics and Epigenetics
|
| Lab |
Histone Variant Group
|
| Street address |
384 Victoria Street
|
| City |
Darlinghurst |
| State/province |
NSW |
| ZIP/Postal code |
2010 |
| Country |
Australia |
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| Platforms (4)
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| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (28)
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| This SubSeries is part of SuperSeries: |
| GSE76337 |
Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer |
|
| Relations |
| BioProject |
PRJNA306940 |
| SRA |
SRP067780 |
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