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Series GSE77034 Query DataSets for GSE77034
Status Public on Aug 30, 2016
Title Total RNA sequencing of HCT116 cells with vitamin C, 5-Aza-CdR and combination treatment compared to untreated cells II
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Total RNA sequenceing method was used to compare the differential expression of genes in HCT116 cells with vitamin C, 5-Aza-CdR and combination treatment compared to untreated cells
 
Overall design Examination of total RNA expressed after cells with vitamin C, 5-Aza-CdR and combination treatment compared to untreated cells
 
Contributor(s) Liu M, Jones PA
Citation(s) 27573823
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 CA082422 Mechanisms of De Novo Methylation in Cancer VAN ANDEL RESEARCH INSTITUTE JONES
Submission date Jan 20, 2016
Last update date May 15, 2019
Contact name Peter A Jones
E-mail(s) Peter.Jones@vai.org
Organization name Van Andel Research Institute
Department Center for Epigenetics
Lab Jones Lab
Street address 333 Bostwick Ave
City Grand Rapids
State/province MI
ZIP/Postal code 49503
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (4)
GSM2042809 HCT116_PBS 2
GSM2042810 HCT116_Vc 2
GSM2042811 HCT116_Aza 2
Relations
BioProject PRJNA309301
SRA SRP068677

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77034_aza_vs_PBS.gene_exp.tsv.gz 1.9 Mb (ftp)(http) TSV
GSE77034_aza_vs_vc.gene_exp.tsv.gz 2.0 Mb (ftp)(http) TSV
GSE77034_combo_vs_PBS.gene_exp.tsv.gz 2.0 Mb (ftp)(http) TSV
GSE77034_combo_vs_aza.gene_exp.tsv.gz 2.0 Mb (ftp)(http) TSV
GSE77034_combo_vs_vc.gene_exp.tsv.gz 2.0 Mb (ftp)(http) TSV
GSE77034_vc_vs_PBS.gene_exp.tsv.gz 1.8 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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