|
| Status |
Public on Oct 05, 2016 |
| Title |
EIN2 mediates histone H3K14 and non-canonical histone H3K23 acetylation in the nucleus in ethylene response [ChIP-seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report that ethylene specifically elevated acetylation of histone H3 at K14 and the non-canonical acetylation of histone H3 at K23. We perform Chip-sequencing of H3K14Ac, H3K23Ac and H3K9Ac using chromatins isolated from 3-day old etiolated Col-0 seedlings treated with ethylene or air gas. Results show that ethylene specifically elevates H3K14Ac and non-canonical H3K23Ac in EIN3 targeted genes that are regulated at the transcriptional level by ethylene.
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| |
|
| Overall design |
Examination of 3 different histone modifications in 2 Arabidopsis lines which under 2 different treatment.
|
| |
|
| Contributor(s) |
Qiao H, Zhang F, Wang L |
| Citation(s) |
27694846 |
| Submission date |
Jan 29, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Hong Qiao |
| Organization name |
The University of Texas at Austin
|
| Department |
Department of Molecular Biosciences
|
| Lab |
Qiao lab
|
| Street address |
2506 speedway, NMS5.324
|
| City |
Austin |
| State/province |
TEXAS |
| ZIP/Postal code |
78731 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (22)
|
|
| This SubSeries is part of SuperSeries: |
| GSE77396 |
EIN2 mediates histone H3K14 and non-canonical histone H3K23 acetylation in the nucleus in ethylene response |
|
| Relations |
| BioProject |
PRJNA310221 |
| SRA |
SRP069077 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE77394_14add20_19_peaks.xls.gz |
264.9 Kb |
(ftp)(http) |
XLS |
| GSE77394_15add21_19_peaks.xls.gz |
350.1 Kb |
(ftp)(http) |
XLS |
| GSE77394_17add23_16_peaks.xls.gz |
216.3 Kb |
(ftp)(http) |
XLS |
| GSE77394_18add24_16_peaks.xls.gz |
298.0 Kb |
(ftp)(http) |
XLS |
| GSE77394_25add27_7_peaks.xls.gz |
290.6 Kb |
(ftp)(http) |
XLS |
| GSE77394_26add28_4_peaks.xls.gz |
542.0 Kb |
(ftp)(http) |
XLS |
| GSE77394_2_7_peaks.xls.gz |
78.4 Kb |
(ftp)(http) |
XLS |
| GSE77394_3add9_7_peaks.xls.gz |
133.3 Kb |
(ftp)(http) |
XLS |
| GSE77394_5_4_peaks.xls.gz |
420.8 Kb |
(ftp)(http) |
XLS |
| GSE77394_6add12_4_peaks.xls.gz |
367.6 Kb |
(ftp)(http) |
XLS |
| GSE77394_bedgraph_files.tar.gz |
3.1 Gb |
(ftp)(http) |
TAR |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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