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| Status |
Public on May 31, 2016 |
| Title |
Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing [miRNA-seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
AGO3 predominantly bound 24-nt sRNAs with 5’ terminal adenine. The spectrum of AGO3-associated sRNAs was different from those bound to AGO2. By contrast, approximately 30% of AGO3-bound 24-nt sRNAs overlapped with those bound to AGO4 and over 60% of AGO3-associated 24-nt sRNA enriched loci were identical to those of AGO4. In addition, expression of AGO3 driven by AGO4 native promoter partially complemented AGO4 function and rescued DNA methylation defect in ago4-1 background.
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| |
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| Overall design |
Examination of AGO3 and AGO2 bound small RNAs with/without salt stress.
|
| |
|
| Contributor(s) |
Zhang Z, Zhang X, Liu X, Wang X |
| Citation(s) |
27243648 |
| Submission date |
Feb 19, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Xiuying Liu |
| Organization name |
Changping Laboratory
|
| Street address |
Yard 28, Science Park Road, Changping District
|
| City |
Beijing |
| ZIP/Postal code |
102206 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (7)
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| This SubSeries is part of SuperSeries: |
| GSE78090 |
Arabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing |
|
| Relations |
| BioProject |
PRJNA312591 |
| SRA |
SRP070554 |
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