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GEO accession:
Series GSE79355
Query DataSets for GSE79355
Status
Public on Sep 29, 2017
Title
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana
Organism
Arabidopsis thaliana
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28893714
Submission date
Mar 17, 2016
Last update date
Jul 25, 2021
Contact name
Sandra Cortijo
E-mail(s)
sandra.cortijo@slcu.cam.ac.uk
Organization name
Sainsbury Laboratory, Cambridge University
Street address
Bateman Street
City
Cambridge
ZIP/Postal code
CB2 1LR
Country
United Kingdom
Platforms (3)
GPL13222
Illumina HiSeq 2000 (Arabidopsis thaliana)
GPL17311
Illumina HiSeq 1000 (Arabidopsis thaliana)
GPL19580
Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (108)
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GSM2092742
RNA-seq_17c_0min_rep1
GSM2092743
RNA-seq_17c_15min_rep1
GSM2092744
RNA-seq_17c_15min_rep2
GSM2092745
RNA-seq_17c_1hr_rep1
GSM2092746
RNA-seq_17c_1hr_rep2
GSM2092747
RNA-seq_17c_4hr_rep1
GSM2092748
RNA-seq_17c_4hr_rep2
GSM2092749
RNA-seq_27c_15min_rep1
GSM2092750
RNA-seq_27c_15min_rep2
GSM2092751
RNA-seq_27c_1hr_rep1
GSM2092752
RNA-seq_27c_1hr_rep2
GSM2092753
RNA-seq_27c_4hr_rep1
GSM2092754
RNA-seq_27c_4hr_rep2
GSM2092755
RNA-seq_17c_0min_37cExp
GSM2092756
RNA-seq_17c_15min_37cExp
GSM2092757
RNA-seq_17c_1hr_37cExp
GSM2092758
RNA-seq_17c_4hr_37cExp
GSM2092759
RNA-seq_37c_15min_37cExp
GSM2092760
RNA-seq_37c_1hr_37cExp
GSM2092761
RNA-seq_37c_4hr_37cExp
GSM2092762
RNA-seq_22c_0min
GSM2092763
RNA-seq_22c_15min
GSM2092764
RNA-seq_22c_1hr
GSM2092765
RNA-seq_22c_4hr
GSM2092766
RNA-seq_22to27c_15min
GSM2092767
RNA-seq_22to27c_1hr
GSM2092768
RNA-seq_22to27c_4hr
GSM2092769
HTA11_ChIP-seq_17c_15min_rep1
GSM2092770
HTA11_ChIP-seq_17c_15min_rep2
GSM2092771
HTA11_ChIP-seq_17c_15min_rep3
GSM2092772
HTA11_ChIP-seq_17c_1hr_rep1
GSM2092773
HTA11_ChIP-seq_17c_1hr_rep2
GSM2092774
HTA11_ChIP-seq_17c_1hr_rep3
GSM2092775
HTA11_ChIP-seq_17c_4hr_rep1
GSM2092776
HTA11_ChIP-seq_17c_4hr_rep2
GSM2092777
HTA11_ChIP-seq_17c_4hr_rep3
GSM2092778
HTA11_ChIP-seq_27c_15min_rep1
GSM2092779
HTA11_ChIP-seq_27c_15min_rep2
GSM2092780
HTA11_ChIP-seq_27c_15min_rep3
GSM2092781
HTA11_ChIP-seq_27c_1hr_rep1
GSM2092782
HTA11_ChIP-seq_27c_1hr_rep2
GSM2092783
HTA11_ChIP-seq_27c_1hr_rep3
GSM2092784
HTA11_ChIP-seq_27c_4hr_rep1
GSM2092785
HTA11_ChIP-seq_27c_4hr_rep2
GSM2092786
HTA11_ChIP-seq_27c_4hr_rep3
GSM2092787
MNase-seq_17c_15min_rep1
GSM2092788
MNase-seq_17c_15min_rep2
GSM2092789
MNase-seq_17c_1hr_rep1
GSM2092790
MNase-seq_17c_4hr_rep1
GSM2092791
MNase-seq_17c_4hr_rep2
GSM2092792
MNase-seq_27c_15min_rep1
GSM2092793
MNase-seq_27c_15min_rep2
GSM2092794
MNase-seq_27c_1hr_rep1
GSM2092795
MNase-seq_27c_1hr_rep2
GSM2092796
MNase-seq_27c_4hr_rep1
GSM2092797
MNase-seq_27c_4hr_rep2
GSM2092798
HTA11_ChIP-seq_17c_15min_37Exp
GSM2092799
HTA11_ChIP-seq_17c_1hr_37Exp
GSM2092800
HTA11_ChIP-seq_17c_4hr_37Exp
GSM2092801
HTA11_ChIP-seq_37c_15min_37Exp
GSM2092802
HTA11_ChIP-seq_37c_1hr_37Exp
GSM2092803
HTA11_ChIP-seq_37c_4hr_37Exp
GSM2092804
MNase-seq_17c_15min_37Exp
GSM2092805
MNase-seq_17c_1hr_37Exp
GSM2092806
MNase-seq_17c_4hr_37Exp
GSM2092807
MNase-seq_37c_15min_37Exp
GSM2092808
MNase-seq_37c_1hr_37Exp
GSM2092809
MNase-seq_37c_4hr_37Exp
GSM2092810
H3_ChIP-seq_17c_15min_rep1
GSM2092811
H3_ChIP-seq_17c_15min_rep2
GSM2092812
H3_ChIP-seq_17c_1hr_rep1
GSM2092813
H3_ChIP-seq_17c_1hr_rep2
GSM2092814
H3_ChIP-seq_17c_4hr_rep1
GSM2092815
H3_ChIP-seq_17c_4hr_rep2
GSM2092816
H3_ChIP-seq_27c_15min_rep1
GSM2092817
H3_ChIP-seq_27c_15min_rep2
GSM2092818
H3_ChIP-seq_27c_1hr_rep1
GSM2092819
H3_ChIP-seq_27c_1hr_rep2
GSM2092820
H3_ChIP-seq_27c_4hr_rep1
GSM2092821
H3_ChIP-seq_27c_4hr_rep2
GSM2092822
H2B_ChIP-seq_17c_15min
GSM2092823
H2B_ChIP-seq_17c_1hr
GSM2092824
H2B_ChIP-seq_17c_4hr
GSM2092825
H2B_ChIP-seq_27c_15min
GSM2092826
H2B_ChIP-seq_27c_1hr
GSM2092827
H2B_ChIP-seq_27c_4hr
GSM2092828
HSFA1A_ChIP-seq_17c_15min
GSM2092829
HSFA1A_ChIP-seq_27c_15min
GSM2092830
HSFA1A_ChIP-seq_37c_15min
GSM2092831
HSFA1A_ChIP-seq_INPUT
GSM2092832
PolII_ChIP_seq_17c_15min
GSM2092833
PolII_ChIP_seq_27c_15min
GSM2491655
RNA-seq_TK_17c_0min
GSM2491656
RNA-seq_TK_17c_15min
GSM2491657
RNA-seq_TK_17c_1hr
GSM2491658
RNA-seq_TK_17c_4hr
GSM2491659
RNA-seq_TK_27c_15min
GSM2491660
RNA-seq_TK_27c_1hr
GSM2491661
RNA-seq_TK_27c_4hr
GSM2491662
RNA-seq_QK_17c_0min
GSM2491663
RNA-seq_QK_17c_15min
GSM2491664
RNA-seq_QK_17c_1hr
GSM2491665
RNA-seq_QK_17c_4hr
GSM2491666
RNA-seq_QK_27c_15min
GSM2491667
RNA-seq_QK_27c_1hr
GSM2491668
RNA-seq_QK_27c_4hr
GSM2747903
RNA-seq_17c_15min_arp6_rep1
GSM2747904
RNA-seq_17c_15min_arp6_rep2
This SuperSeries is composed of the following SubSeries:
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GSE79353
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-seq I]
GSE79354
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [ChIP-seq & Mnase-seq]
GSE94900
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-Seq II]
GSE102898
Genome-wide analysis of transcription, H2A.Z, nucleosomes and HSF1 dynamics in response to temperature increase in Arabidopsis thaliana [RNA-Seq III]
Relations
BioProject
PRJNA315568
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File type/resource
GSE79355_RAW.tar
430.2 Mb
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TAR (of TXT)
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