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| Status |
Public on Sep 07, 2017 |
| Title |
Genome-wide study reveals dual function of histone binding protein ENAP1 in ethylene signaling |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Purpose: Next-generation sequencing (NGS) has been used to study the gene expression in different samples under air and ethylene treatment. The goal of this study is to uncover how ENAP1 and H3K23Ac dynamically coordinate with EIN3 to regulate gene expression in response to ethylene.
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| Overall design |
Whole seedling mRNA profiles of 3-day old ein2, ein3eil1, ENAP1ox/ein2 and ENAP1ox/ein3eil1 (in COL background) were generated by sequencing, in 2 replications, using Illumina HiSeq 2000
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| Contributor(s) |
Qiao H, Wang L, Zhang F |
| Citation(s) |
28874528 |
| Submission date |
Jun 10, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Hong Qiao |
| Organization name |
The University of Texas at Austin
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| Department |
Department of Molecular Biosciences
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| Lab |
Qiao lab
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| Street address |
2506 speedway, NMS5.324
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| City |
Austin |
| State/province |
TEXAS |
| ZIP/Postal code |
78731 |
| Country |
USA |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA325296 |
| SRA |
SRP076414 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE83214_ENAP1ox_ein2_air_vs_C2H4_gene_exp.diff.gz |
1.1 Mb |
(ftp)(http) |
DIFF |
| GSE83214_ENAP1ox_ein3eil1_air_vs_C2H4_gene_exp.diff.gz |
1.1 Mb |
(ftp)(http) |
DIFF |
| GSE83214_ein2_air_vs_C2H4_gene_exp.diff.gz |
1.1 Mb |
(ftp)(http) |
DIFF |
| GSE83214_ein3eil1_air_vs_C2H4_gene_exp.diff.gz |
1.1 Mb |
(ftp)(http) |
DIFF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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