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| Status |
Public on Nov 15, 2017 |
| Title |
SMAD2/3 are redirected to novel sites in MCF10A MII after prolonged TGFβ stimulation |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
29186616 |
| Submission date |
Jun 27, 2016 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Masato Morikawa |
| E-mail(s) |
morikawa-tky@umin.ac.jp
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| Phone |
+81-3-3964-1211
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| Organization name |
Teikyo University
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| Department |
Advanced Comprehensive Research Organization
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| Street address |
2-21-1 Kaga, Itabashi-ku
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| City |
Tokyo |
| ZIP/Postal code |
173-0003 |
| Country |
Japan |
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| Platforms (4)
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| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (18)
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| GSM2218829 |
MCF10A MII_siControl, control_RNA |
| GSM2218830 |
MCF10A MII_siControl, TGFβ 1.5h_RNA |
| GSM2218831 |
MCF10A MII_siControl, TGFβ 16h_RNA |
| GSM2218832 |
MCF10A MII_siJUNB, control_RNA |
| GSM2218833 |
MCF10A MII_siJUNB, TGFβ 1.5h_RNA |
| GSM2218834 |
MCF10A MII_siJUNB, TGFβ 16h_RNA |
| GSM2218835 |
SMAD2/3, MCF10A MII, TGFβ 1.5h_ChIP |
| GSM2218836 |
SMAD2/3, MCF10A MII, TGFβ 16h_ChIP |
| GSM2218837 |
input DNA, MCF10A MII |
| GSM2795970 |
SMAD2/3, Hs578T, TGFβ 1.5h_ChIP |
| GSM2795971 |
SMAD2/3, Hs578T, TGFβ 16h_ChIP |
| GSM2795972 |
input DNA, Hs578T |
| GSM2795973 |
SMAD2/3, BT549, TGFβ 1.5h_ChIP |
| GSM2795974 |
SMAD2/3, BT549, TGFβ 16h_ChIP |
| GSM2795975 |
input DNA, BT549 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE83786 |
JUNB is a critical AP1 component for SMAD2/3 binding after TGFβ stimulation [RNA-seq] |
| GSE83787 |
SMAD2/3 binding pattern in a breast epithelial cell line, MCF10A MII [ChIP-seq] |
| GSE104352 |
SMAD2/3 binding pattern in triple-negative breast cancer cell lines, Hs578T and BT549 [ChIP-seq] |
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| Relations |
| BioProject |
PRJNA326978 |
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