|
| Status |
Public on Oct 28, 2016 |
| Title |
RNA-seq analysis of mRNAs immunoprecipitated by wild-type (WT) or phospho-mimetic (S200D) FLAG-LIN28A in PA1 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To explore the effect of LIN28 (S200) phosphorylation on LIN28's association with mRNAs on a transcriptome-wide scale, we performed mRNA-seq on RNAs immunoprecipitated (RIP-seq) by wild-type (WT) or phospho-mimetic (S200D) LIN28 in PA1 cells.
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| |
|
| Overall design |
Examination of mRNAs immunoprecipitated by wild-type and phospho-mimetic (S200D) FLAG-LIN28 (in triplicate)
|
| |
|
| Contributor(s) |
Tsanov KM, Pearson DS, Han A, Daley GQ |
| Citation(s) |
27992407 |
| Submission date |
Jun 30, 2016 |
| Last update date |
Jun 26, 2019 |
| Contact name |
Areum Han |
| E-mail(s) |
areum.han@childrens.harvard.edu
|
| Organization name |
Boston Children's Hospital
|
| Lab |
Daley lab
|
| Street address |
Karp Family Building, 7th Floor. 300 Longwood Ave.
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (18)
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| This SubSeries is part of SuperSeries: |
| GSE83906 |
RNA-seq analysis of mRNAs immunoprecipitated by wild-type (WT), phospho-mimetic (S200D), or phospho-null (S200A) FLAG-LIN28A |
|
| Relations |
| BioProject |
PRJNA327371 |
| SRA |
SRP077647 |
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