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Series GSE85937 Query DataSets for GSE85937
Status Public on Nov 30, 2016
Title Genome profiling of free circulating tumor DNA by oncoscan and comparison to profiles in tumor biopsies evaluated by cytoscan
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Genomic profiles of tumor DNA obtained from biopsies were systematically compared to corresponding samples of circulating cell free tumor DNA. The aim was to investigate correspondance between numerical, segmental and focal aberrations, as well as precision in detection and resolution of oncoscan array performance on cfDNA.
 
Overall design tumor DNA from biopsies was analyzed for genomic aberrations by CytoScan HD and cfDNA from blood by OncoScan.
 
Contributor(s) Østrup O, Ahlborn LB, Nielsen FC
Citation(s) 28417079
Submission date Aug 23, 2016
Last update date Jun 25, 2019
Contact name Olga Østrup
E-mail(s) olga.oestrup@regionh.dk
Phone 004561695675
Organization name Copenhagen University Hospital (Rigshospitalet)
Department Genomic Medicine
Street address Blegdamsvej 9
City Copenhagen
ZIP/Postal code 2100
Country Denmark
 
Platforms (2)
GPL16131 [CytoScanHD_Array] Affymetrix CytoScan HD Array
GPL21558 [OncoScan_CNV] Affymetrix OncoScan CNV FFPE Assay
Samples (28)
GSM2288048 Tumor biopsy from patient 1
GSM2288049 Tumor biopsy from patient 2
GSM2288050 Tumor biopsy from patient 3
Relations
BioProject PRJNA339789

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85937_RAW.tar 1.6 Gb (http)(custom) TAR (of CEL, CYCHP, OSCHP)
Processed data provided as supplementary file

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