|
| Status |
Public on Nov 30, 2016 |
| Title |
Circulating cell-free DNA from patient 5, in treatment 2 |
| Sample type |
genomic |
| |
|
| Source name |
patient sample
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: circulating cell-free DNA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Qiagen manufactures procedure; specifically QIAsymphony Circulating DNA Kit and Rneasy MIniPrep. DNA quality and quantity was controled by BioAnalyzer and Nanodrop.
|
| Label |
Biotin
|
| Label protocol |
affymetrix manufactures procedure
|
| |
|
| Hybridization protocol |
affymetrix manufactures procedure
|
| Scan protocol |
affymetrix manufactures procedure
|
| Description |
Hybridized to OncoScan
|
| Data processing |
BioDiscovery software NEXUS 7.5
data represents the SNP data of cfDNA analysed by OncoScan and tumor DNA analysed by CytoScanHD
|
| |
|
| Submission date |
Aug 23, 2016 |
| Last update date |
Nov 30, 2016 |
| Contact name |
Olga Østrup |
| E-mail(s) |
olga.oestrup@regionh.dk
|
| Phone |
004561695675
|
| Organization name |
Copenhagen University Hospital (Rigshospitalet)
|
| Department |
Genomic Medicine
|
| Street address |
Blegdamsvej 9
|
| City |
Copenhagen |
| ZIP/Postal code |
2100 |
| Country |
Denmark |
| |
|
| Platform ID |
GPL21558 |
| Series (1) |
| GSE85937 |
Genome profiling of free circulating tumor DNA by oncoscan and comparison to profiles in tumor biopsies evaluated by cytoscan |
|
