|
| Status |
Public on Aug 29, 2016 |
| Title |
O-GlcNAc Aminidase is an RNA Pol II Elongation Factor Coupled to Pausing Factors SPT5 and TIF1b |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ChIP-seq shows that OGA and O-GlcNAc are found at promoters/TSS concomitantly with the known elongation factors SPT5 and TIF1b as well as RNA pol II. There are gene body overlaps of various combinations of factors as well.
|
| |
|
| Overall design |
ChIP-seq of the indicated factors from the human BJAB B-cell line
|
| |
|
| Contributor(s) |
Lewis B, Kim B |
| Citation(s) |
27601472 |
| Submission date |
Aug 28, 2016 |
| Last update date |
Aug 07, 2019 |
| Contact name |
Brian Andrew Lewis |
| E-mail(s) |
lewisbri@mail.nih.gov
|
| Phone |
301-435-8323
|
| Fax |
301-496-9956
|
| Organization name |
National Cancer Institute-NIH
|
| Department |
metabolism Branch
|
| Lab |
Lewis Lab
|
| Street address |
9000 Rockville Pike
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (7)
|
|
| Relations |
| BioProject |
PRJNA340372 |
| SRA |
SRP083139 |
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