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| Status |
Public on Aug 22, 2017 |
| Title |
Identification of a core p53 transcriptional program with highly fractionated tumor suppressive activity |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
28904012 |
| Submission date |
Aug 30, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Ahwan Pandey |
| E-mail(s) |
ahwan.pandey@ucdenver.edu
|
| Organization name |
University of Colorado Anschutz Medical Center
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| Department |
Pharmacology
|
| Lab |
Espinosa Lab
|
| Street address |
12800 E. 19th Ave.
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| City |
Aurora |
| State/province |
CO |
| ZIP/Postal code |
80045 |
| Country |
USA |
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| Platforms (2) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17303 |
Ion Torrent Proton (Homo sapiens) |
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| Samples (61)
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| GSM2296273 |
MCF7, ChIP-Seq, Input |
| GSM2296274 |
MCF7, ChIP-Seq, DMSO treated |
| GSM2296275 |
MCF7, ChIP-Seq, Nutlin treated |
| GSM2296276 |
SJSA, ChIP-Seq, Input |
| GSM2296277 |
SJSA, ChIP-Seq, DMSO treated |
| GSM2296278 |
SJSA, ChIP-Seq, Nutlin treated |
| GSM2296620 |
HCT116, GRO-Seq, DMSO treated, replicate 1 |
| GSM2296622 |
HCT116, GRO-Seq, DMSO treated, replicate 2 |
| GSM2296625 |
HCT116, GRO-Seq, Nutlin treated, replicate 1 |
| GSM2296633 |
HCT116, GRO-Seq, Nutlin treated, replicate 2 |
| GSM2296635 |
MCF7, GRO-Seq, DMSO treated, replicate 1 |
| GSM2296637 |
MCF7, GRO-Seq, DMSO treated, replicate 2 |
| GSM2296640 |
MCF7, GRO-Seq, Nutlin treated, replicate 1 |
| GSM2296641 |
MCF7, GRO-Seq, Nutlin treated, replicate 2 |
| GSM2296643 |
SJSA, GRO-Seq, DMSO treated, replicate 1 |
| GSM2296646 |
SJSA, GRO-Seq, DMSO treated, replicate 2 |
| GSM2296647 |
SJSA, GRO-Seq, Nutlin treated, replicate 1 |
| GSM2296648 |
SJSA, GRO-Seq, Nutlin treated, replicate 2 |
| GSM2298374 |
HCT116, polysomal RNA, DMSO treated, replicate 1 |
| GSM2298375 |
HCT116, polysomal RNA, DMSO treated, replicate 2 |
| GSM2298376 |
HCT116, polysomal RNA, Nutlin treated, replicate 1 |
| GSM2298377 |
HCT116, polysomal RNA, Nutlin treated, replicate 2 |
| GSM2298378 |
MCF7, polysomal RNA, DMSO treated, replicate 1 |
| GSM2298379 |
MCF7, polysomal RNA, DMSO treated, replicate 2 |
| GSM2298380 |
MCF7, polysomal RNA, Nutlin treated, replicate 1 |
| GSM2298381 |
MCF7, polysomal RNA, Nutlin treated, replicate 2 |
| GSM2298382 |
SJSA, polysomal RNA, DMSO treated, replicate 1 |
| GSM2298383 |
SJSA, polysomal RNA, DMSO treated, replicate 2 |
| GSM2298384 |
SJSA, polysomal RNA, Nutlin treated, replicate 1 |
| GSM2298385 |
SJSA, polysomal RNA, Nutlin treated, replicate 2 |
| GSM2298386 |
SJSA, Genomewide, DMSO treated, replicate 1 |
| GSM2298387 |
SJSA, Genomewide, DMSO treated, replicate 2 |
| GSM2298388 |
SJSA, Genomewide, DMSO treated, replicate 3 |
| GSM2298389 |
SJSA, Genomewide, Nutlin treated, replicate 1 |
| GSM2298390 |
SJSA, Genomewide, Nutlin treated, replicate 2 |
| GSM2298391 |
SJSA, Genomewide, Nutlin treated, replicate 3 |
| GSM2298392 |
SJSA, p53 Target, DMSO treated, replicate 1 |
| GSM2298393 |
SJSA, p53 Target, DMSO treated, replicate 2 |
| GSM2298394 |
SJSA, p53 Target, DMSO treated, replicate 3 |
| GSM2298395 |
SJSA, p53 Target, Nutlin treated, replicate 1 |
| GSM2298396 |
SJSA, p53 Target, Nutlin treated, replicate 2 |
| GSM2298397 |
SJSA, p53 Target, Nutlin treated, replicate 3 |
| GSM2298398 |
p53ko HCT116, total RNA, DMSO treated, replicate 1 |
| GSM2298399 |
p53ko HCT116, total RNA, DMSO treated, replicate 2 |
| GSM2298400 |
p53ko HCT116, total RNA, Nutlin treated, replicate 1 |
| GSM2298401 |
p53ko HCT116, total RNA, Nutlin treated, replicate 2 |
| GSM2298402 |
wt HCT116, total RNA, DMSO treated, replicate 1 |
| GSM2298403 |
wt HCT116, total RNA, DMSO treated, replicate 2 |
| GSM2298404 |
wt HCT116, total RNA, Nutlin treated, replicate 1 |
| GSM2298405 |
wt HCT116, total RNA, Nutlin treated, replicate 2 |
| GSM2298406 |
MCF7, total RNA, DMSO treated, replicate 1 |
| GSM2298407 |
MCF7, total RNA, DMSO treated, replicate 2 |
| GSM2298408 |
MCF7, total RNA, Nutlin treated, replicate 1 |
| GSM2298409 |
MCF7, total RNA, Nutlin treated, replicate 2 |
| GSM2298410 |
SJSA, total RNA, DMSO treated, replicate 1 |
| GSM2298411 |
SJSA, total RNA, DMSO treated, replicate 2 |
| GSM2298412 |
SJSA, total RNA, Nutlin treated, replicate 1 |
| GSM2298413 |
SJSA, total RNA, Nutlin treated, replicate 2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE86164 |
p53 ChIP-seq in Nutlin-treated HCT116, MCF7, and SJSA cell lines |
| GSE86165 |
GRO-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin |
| GSE86219 |
RNAseq from polysomal RNA harvested from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin |
| GSE86220 |
shRNA screens for mediators of anti-proliferative effects of p53 in SJSA cell line |
| GSE86221 |
Total RNA-seq from HCT116, MCF7 and SJSA cell lines treated with DMSO and Nutlin |
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| Relations |
| BioProject |
PRJNA340955 |
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