|
| Status |
Public on Apr 06, 2017 |
| Title |
Dynamic gene regulatory networks of human myeloid differentiation [ATAC-seq_siRNA] |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We utilize gene expression and open chromatin footprinting data to build a gene regulatory network of key transcription factors that capture the cell and time-specific regulatory programs specified during human myeloid differentiation.
|
| |
|
| Overall design |
ATAC-seq profiling of undifferentiated HL-60, differentiating macrophage, neutrophil, monocyte, and monocyte-derived macrophage cells.
|
| |
|
| Contributor(s) |
Ramirez RN, Mortazavi A |
| Citation(s) |
28365152 |
| Submission date |
Sep 20, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Ricardo Noel Ramirez |
| E-mail(s) |
ricardnr@uci.edu
|
| Organization name |
University of California Irvine
|
| Department |
Developmental and Cell Biology
|
| Street address |
2300 Biological Sciences III
|
| City |
Irvine |
| State/province |
California |
| ZIP/Postal code |
92697 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (8)
|
|
| This SubSeries is part of SuperSeries: |
| GSE79046 |
Dynamic gene regulatory networks of human myeloid differentiation |
|
| Relations |
| BioProject |
PRJNA343598 |
| SRA |
SRP090164 |
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