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| Status |
Public on Mar 21, 2017 |
| Title |
H2A monoubiquitination in Arabidopsis is generally independent of LHP1 and PRC2 activity [ChIP-seq] |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
BACKGROUND:
Polycomb group complexes PRC1 and PRC2 repress gene expression at the chromatin level in eukaryotes. The classic recruitment model of Polycomb group complexes in which PRC2-mediated H3K27 trimethylation recruits PRC1 for H2A monoubiquitination was recently challenged by data showing that PRC1 activity can also recruit PRC2. However, the prevalence of these two mechanisms is unknown, especially in plants as H2AK121ub marks were examined at only a handful of Polycomb group targets.
RESULTS:
By using genome-wide analyses, we show that H2AK121ub marks are surprisingly widespread in Arabidopsis thaliana, often co-localizing with H3K27me3 but also occupying a set of transcriptionally active genes devoid of H3K27me3. Furthermore, by profiling H2AK121ub and H3K27me3 marks in atbmi1a/b/c, clf/swn, and lhp1 mutants we found that PRC2 activity is not required for H2AK121ub marking at most genes. In contrast, loss of AtBMI1 function impacts the incorporation of H3K27me3 marks at most Polycomb group targets.
CONCLUSIONS:
Our findings show the relationship between H2AK121ub and H3K27me3 marks across the A. thaliana genome and unveil that ubiquitination by PRC1 is largely independent of PRC2 activity in plants, while the inverse is true for H3K27 trimethylation.
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| Overall design |
H2AK121ub and H3K27me3 profiles of 7DAG Arabidopsis seedlings Col-0, strong atbmi1a/b/c triple mutant, clf28/swn7 double mutant and lhp1 mutant. Two independent biological replicates are considered for each genotype.
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| |
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| Contributor(s) |
Zhou Y, Romero-Campero F, Gomez-Zambrano A, Turck F, Calonje M |
| Citation(s) |
28403905, 34003929 |
| Submission date |
Oct 31, 2016 |
| Last update date |
Sep 08, 2021 |
| Contact name |
Myriam Calonje |
| E-mail(s) |
myriam.calonje@ibvf.csic.es
|
| Organization name |
Institute for Plant Biochemistry and Photosynthesis (CSIC - University of Sevilla)
|
| Street address |
Americo Vespucio 49
|
| City |
Sevilla |
| ZIP/Postal code |
41092 |
| Country |
Spain |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (21)
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| This SubSeries is part of SuperSeries: |
| GSE89358 |
H2A monoubiquitination in Arabidopsis is generally independent of LHP1 and PRC2 activity |
|
| Relations |
| BioProject |
PRJNA351870 |
| SRA |
SRP092349 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE89357_normalized_results_h2aub_atbmi1abc_vs_col0_rep1.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h2aub_atbmi1abc_vs_col0_rep2.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h2aub_clfswn_vs_col0_rep1.txt.gz |
1.7 Mb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h2aub_clfswn_vs_col0_rep2.txt.gz |
1.8 Mb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h2aub_lhp1_vs_col0_rep1.txt.gz |
1.6 Mb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h2aub_lhp1_vs_col0_rep2.txt.gz |
1.7 Mb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h3k27me3_atbmi1abc_vs_col0_rep1.txt.gz |
689.9 Kb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h3k27me3_atbmi1abc_vs_col0_rep2.txt.gz |
673.2 Kb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h3k27me3_clfswn_vs_col0_rep1.txt.gz |
432.4 Kb |
(ftp)(http) |
TXT |
| GSE89357_normalized_results_h3k27me3_clfswn_vs_col0_rep2.txt.gz |
503.3 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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