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Series GSE93875 Query DataSets for GSE93875
Status Public on Aug 11, 2017
Title An integrative analysis of different histone acetylation in ethylene response in Arabidopsis
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We reported that ethylene specifically elevated acetylation of histone H3 at K14 and the non-canonical acetylation of histone H3 at K23,but not H3K9ac.Thus, we further performed Chip-sequencing of H3K9Ac, using chromatins isolated from 3-day old etiolated ein2-5 seedlings treated with ethylene or air gas.
 
Overall design Examination of 1 histone modification (H3K9Ac) in 1 Arabidopsis line which under 2 different treatment.
 
Contributor(s) Qiao H, Zhang F, Wang L
Citation(s) 28716006
Submission date Jan 19, 2017
Last update date May 15, 2019
Contact name Hong Qiao
Organization name The University of Texas at Austin
Department Department of Molecular Biosciences
Lab Qiao lab
Street address 2506 speedway, NMS5.324
City Austin
State/province TEXAS
ZIP/Postal code 78731
Country USA
 
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (6)
GSM2464377 ein2_H3K9Ac_air_ChIPseq_rep1
GSM2464378 ein2_H3K9Ac_air_ChIPseq_rep2
GSM2464379 ein2_H3K9Ac_C2H4_ChIPseq_rep1
Relations
BioProject PRJNA362641
SRA SRP097224

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE93875_C33_C35vs19_control_lambda.bedgraph.gz 122.8 Mb (ftp)(http) BEDGRAPH
GSE93875_C33_C35vs19_peaks.txt.gz 552.2 Kb (ftp)(http) TXT
GSE93875_C33_C35vs19_treat_pileup.bedgraph.gz 307.5 Mb (ftp)(http) BEDGRAPH
GSE93875_C34_C36vs16_control_lambda.bedgraph.gz 46.3 Mb (ftp)(http) BEDGRAPH
GSE93875_C34_C36vs16_peaks.txt.gz 348.3 Kb (ftp)(http) TXT
GSE93875_C34_C36vs16_treat_pileup.bedgraph.gz 294.3 Mb (ftp)(http) BEDGRAPH
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Raw data are available in SRA
Processed data are available on Series record

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