|
| Status |
Public on Jan 01, 2015 |
| Title |
IBH1-Ox 1 |
| Sample type |
SRA |
| |
|
| Source name |
Arabidopsis thaliana
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
ecotype: Col-0
genotype/variation: 35S:IBH1-myc
tissue: Seedling
|
| Growth protocol |
Wild type Arabidopsis, 35S:IBH1-myc and 35S:IBH1-myc/35S:PRE1-YFP were grown on half-strength MS medium for 5 days under constant light.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted with Spectrum Plant Total RNA Kit (Sigma)
Libraries were constructed with barcodes using TruSeqTM RNA Sample Preparation Kit (Ilumina)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
The sequence reads were mapped to the Arabidopsis genome using Tophat software, and differential gene expression was analyzed using DeSeq software.
Genome_build: TAIR10
|
| |
|
| Submission date |
Oct 23, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Mingyi Bai |
| Organization name |
Shandong University
|
| Department |
Life of Scienec
|
| Lab |
Bai
|
| Street address |
27 Shandananlu
|
| City |
Jinan |
| State/province |
Shandong |
| ZIP/Postal code |
250100 |
| Country |
China |
| |
|
| Platform ID |
GPL13222 |
| Series (1) |
| GSE41766 |
A triple-HLH/bHLH Cascade Controls Cell Elongation Downstream of Multiple Hormonal and Environmental Signaling Pathways |
|
| Relations |
| SRA |
SRX200127 |
| BioSample |
SAMN01779496 |
